hlaSNPGenoClass {HIBAG} | R Documentation

## The class of SNP genotypes

### Description

The class of SNP genotypes, and its instance is returned from `hlaMakeSNPGeno`.

### Value

There are five components:

`genotype` | a genotype matrix, “# of SNPs” - by - “# of individuals”
`sample.id` | a vector of sample IDs
`snp.id` | a vector of SNP IDs
`snp.position` | a vector of SNP positions in basepair
`snp.allele` | a vector of characters with a format of “A allele/B allele”
`assembly` | the human genome reference, such like "hg19"

### Author(s)

Xiuwen Zheng

### See Also

`hlaMakeSNPGeno`

[Package HIBAG version 1.18.1 Index]