INDEED                  INDEED: A package for biomarker candidate
                        prioritization.
Met_GU                  GU CIRR and GU HCC combined .
Met_Group_GU            Group label.
Met_name_GU             KEGG ID
choose_rho              Draw error curve
compute_cor             Compute the correlation
compute_dns             Calculate differential network score
compute_par             Compute the partial correlation
loglik_ave              Create log likelihood error function
non_partial_cor         Non-partial correlaton analysis
partial_cor             Data preprocessing for partial correlaton
                        analysis
permutation_cor         Permutations to build differential network
                        using correlation
permutation_pc          Permutations to build differential network
                        using partial correlation
permutation_thres       Calculate the positive and negative threshold
                        based on the permutation result
pre_partial             Data preprocessing for partial correlaton
                        analysis
pvalue_M_GU             P-values obtained by differential expression
                        (DE) analysis.
pvalue_logit            Obtain p-values using logistic regression
