plotKmerFrequencyCorrelation {IONiseR} | R Documentation

## Display correlation between pentemer proportions in two time windows

### Description

Plots

### Usage

    plotKmerFrequencyCorrelation(summaryData, kmerLength = 5,
      groupedMinutes = 10, only2D = TRUE)

### Arguments

`summaryData` | Object of class Fast5Summary.
`kmerLength` | Specifies the length of kmers to compare. Defaults to 5 given the current pentamer reading nature of the nanopores.
`groupedMinutes` | Defines how many minutes each grouping of reads spans.
`only2D` | Logical. If TRUE kmers are computed for only full 2D reads. If FALSE 2D reads are ignored and all available template and complement strands are used.

### Value

Returns an object of class `gg` representing the plot.

### Examples

    if( require(minionSummaryData) ) {
       data(s.typhi.rep3, package = 'minionSummaryData')
       plotKmerFrequencyCorrelation( s.typhi.rep3, only2D = FALSE )
    }

[Package IONiseR version 2.6.0 Index]