interactive.mixture.boxplot.JointUniquePairs {IdMappingAnalysis} | R Documentation

## Interactive boxplot of mixture component probabilities by match group

### Description

Creates a boxplot for a mixture model derived from JointUniquePairs and Corr objects with optional subsetting by a group of ID Maps. This is an interactive version of JointUniquePairs@corr.boxplot utilizing the JointUniquePairs$interactive.plot wrapper functionality.

### Usage

    ## S3 method for class 'JointUniquePairs'
    interactive.mixture.boxplot(this, corr, groups="loop", G=c(1:5), plot.G=NULL, show.None=FALSE, new.plot=FALSE, file.copy=FALSE, subsetting=FALSE, verbose=TRUE, srt=0, adj=0, ...)

### Arguments

`corr` | Corr object.
`groups` | Either ID Map names, 'menu' or 'loop'. If ID Map names, the functionality is similar to JointPairsMatch$mixture.boxplot If 'menu' or 'loop', user can select the ID Map set interactively from the graphical selection dialog simultaneously controlling the plot destination (same or new graphic device) wherther or not the plot should be saved in a file etc. If 'loop', the interactive drawing cycle repeats untill the user cancells the process.
`G` | Number of components in mixture model. If G is a `vector`, the optimal number of component is determined. G is a `vector` C(1:5) by default.
`plot.G` | The mixture component to be used for plotting. If NULL, the highest-order component of the mixture model is used.
`show.None` | If not `NA`, includes a plot of subset of values not included into any other match group with 'None' label. Default is `NA`.
`new.plot` | `logical` indicating if the new graphic device should be created for plot. In interactive mode can be selected graphically. Default is `FALSE`.
`file.copy` | `logical` or a `character` string indicating if the plot should be saved to a file. If `character` string, it's content used as a file name and if `TRUE`, the default file named is formed and used. In interactive mode can be toggled graphically. Default is `FALSE`

.

`subsetting` | If `TRUE`, interprets Corr subset as a full group or uses the original Corr as a full group otherwise. Default is `FALSE`.
`srt` | Match group label orientation. The default is 0.
`adj` | `numeric` in a range (0..1) determening how close to the x-axis the group labels are, 1 being the closest and 0 being farthest. The default is 0.
`verbose` | If `TRUE` enables diagnostic messages. Default is `FALSE`.
`...` | Additional graphical parameters

### Author(s)

Alex Lisovich, Roger Day

### See Also

For more information see `JointUniquePairs`.

### Examples

     #boxplot of correlations by match group for a given DB set (using short names)
     #treating the given DB set as a full group (subsetting=TRUE)
      DBs=list("NetAffx_Q"="AffQ","DAVID_Q"="DQ","EnVision_Q"="EnV");

     examples$jointUniquePairs$interactive.mixture.boxplot(examples$corr,
    		groups=DBs,
    		subsetting=TRUE,new.plot=TRUE,file.copy=FALSE,G=c(1:5),plot.G=2,
    		srt=30,adj=0,cex=1,cex.lab=1.2,cex.axis=1.2,cex.main=1.2,verbose=TRUE);

     ## Not run:
     #boxplot of correlations by match group choosing the DB set interactively
     examples$jointUniquePairs$interactive.mixture.boxplot(examples$corr,multiline=TRUE,
    		G=c(1:5),plot.G=2,
    		srt=45,adj=0,cex=1,cex.lab=1,cex.axis=1,cex.main=1.2,verbose=TRUE);

    ## End(Not run)

[Package IdMappingAnalysis version 1.26.0 Index]