mixture.boxplot.JointUniquePairs {IdMappingAnalysis} | R Documentation

## Boxplot of a mixture model component by match group

### Description

Creates a boxplot of mixture component data from the Mixture object by a set of match groups from the JointUniquePairs object, utilizing the JointUniquePairs$boxplot function

### Usage

    ## S3 method for class 'JointUniquePairs'
    mixture.boxplot(this, corr, idMapNames=NULL, show.None=FALSE, subsetting=FALSE, group.gap=0.2, G=c(1:5), plot.G=NULL, cex.main=1.2, cex.lab=1, srt=0, adj=0, par.zoom=1, main="Component posterior probability by match group", plot=TRUE, verbose=FALSE, ...)

### Arguments

`corr` | Corr object from which the Mixture object is constructed on the fly to use one of it'c components for the boxplot corresponding to the best fit is plotted.
`idMapNames` | Defines a subset of match group names to be plotted. If `NULL` (default), all group names within the pairsMatch are used.
`subsetting` | If `TRUE`, interprets Corr subset as a full group or uses the original Corr as a full group otherwise. Default is `FALSE`.
`show.None` | If not `NA`, includes a plot of subset of values not included into any other match group with 'None' label. Default is `NA`.
`group.gap` | The gap between match groups. Default is 0.2.
`cex.main` | Font size for plot main title. Default is 1.2.
`cex.lab` | Font size for X and Y axis titles. Default is 1.
`srt` | Match group label orientation (see par('srt')). The default is 0.
`adj` | `numeric` in a range (0..1) determening how close to the x-axis the group labels are, 1 being the closest and 0 is farthest. The default is 0.
`G` | Number of components in mixture model. If G is a `vector`, the optimal number of component is determined. G is a vector (1:5) by default.
`plot.G` | The mixture component to be used for plotting. If `NULL` (default), the highest-order component of the mixture model is used.
`par.zoom` | Graphics parameters zoom factor. Scales the graphical parameters like cex, lwd, mai etc. Default is 1.
`main` | The main title. Default is 'Component posterior probability by match group'
`plot` | if `TRUE` (default) then a boxplot is produced. If not, the summaries which the boxplots are based on are returned.
`verbose` | If `TRUE` enables diagnostic messages. Default is `FALSE`.
`...` | Additional graphical parameters

### Value

Same as for boxplot in graphics package

### Author(s)

Alex Lisovich, Roger Day

### See Also

For more information see `JointUniquePairs`.

### Examples

     #plot posterior second component probability distributions by match group
     mapNames=list(NetAffx_Q="Affy_Q",DAVID_F="D_F",EnVision_Q="EnQ");
     examples$jointUniquePairs$mixture.boxplot(examples$corr,
    	idMapNames=mapNames,
    	multiline=TRUE,subsetting=TRUE, plot.G=2,
    	srt=35, col.points="red",verbose=TRUE);

[Package IdMappingAnalysis version 1.26.0 Index]