ecdf.plot.JointIdMap {IdMappingAnalysis} | R Documentation

## Interactive wrapper for IdMapCounts$plot

### Description

Interactive wrapper of the IdMapDiff$plot allowing to select the ID Map encapsulated within the given JointIdMap object for a ecdf plot through the dialog.

### Usage

    ## S3 method for class 'JointIdMap'
    ecdf.plot(this, idMapNames="loop", complement=TRUE, log=TRUE, new.plot=FALSE, file.copy=FALSE, copy.zoom=1, verbose=TRUE, ...)

### Arguments

`jointIdMap` | JointIdMap object from which ID Map counts information is extracted.
`idMapNames` | either ID Map names, 'menu' or 'loop'. If ID Map names, the functionality is similar to IdMapCounts.plot If 'menu' or 'loop', user can select the ID Maps interactively from the graphical selection dialog simultaneously controlling the plot destination (same or new graphic device) and wherther or not the plot should be saved in a file. If 'loop', the interactive drawing cycle repeats untill the user cancells the process. Default is names of all ID Maps within the jointIdMap object.
`complement` | `logical` indicating wherether the complementary ecdf should be plotted the default is `TRUE`.
`log` | `logical` indicating if log scale should be used. The default is `TRUE`.
`new.plot` | `logical` indicating if the new graphic device should be created for plot. In interactive mode can be selected graphically. Default is `FALSE`.
`file.copy` | `logical` or a `character` string indicating if the plot should be saved to a file. If `character` string, it's content used as a file name and if `TRUE`, the default file named is used. In interactive mode can be toggled graphically. Default is `FALSE`.
`copy.zoom` | Zoom factor used when saving plot in a file. Default is 1.
`verbose` | if `TRUE` enables diagnostic messages. Default is `FALSE`.
`...` | Not used

### Author(s)

Alex Lisovich, Roger Day

### See Also

For more information see `JointIdMap`.

### Examples

     jointIdMap<-JointIdMap(examples$identDfList);

     #non-interactive ecdf plot
     #of 3 DBs DBs encapsulated within the JointIdMap object
     jointIdMap$ecdf.plot(idMapNames=c("NetAffx_F","DAVID_Q","EnVision_Q"));
     ## Not run:
     #interactive plot allowing to choose the DBs to be plotted
     jointIdMap$ecdf.plot();

    ## End(Not run)

[Package IdMappingAnalysis version 1.26.0 Index]