PAscore2 {InPAS} | R Documentation

## calculate the CP score

### Description

calculate CP score by cleanUpdTSeq

### Usage

    PAscore2(seqname, pos, str, idx, idx.gp, genome, classifier, classifier_cutoff)

### Arguments

`seqname` | sequence names
`pos` | genomic positions
`str` | strands
`idx` | offset postion
`idx.gp` | group number of the offset postion
`genome` | an object of BSgenome
`classifier` | a cleanUpdTSeq classifier
`classifier_cutoff` | classifier cutoff value

### Value

a data.frame

### Author(s)

Jianhong Ou

### See Also

`PAscore`

[Package InPAS version 1.14.2 Index]