polishCPs {InPAS} | R Documentation

## polish the searching results of CP sites

### Description

remove the multiple positions of CP sites for same 3UTRs and only keep the best CP sites for proximal and distal.

### Usage

    polishCPs(CPs)

### Arguments

`CPs` | output of searchProximalCPs or proximalAdj

### Value

a matrix with columes: "fit_value", "Predicted_Proximal_APA", "Predicted_Distal_APA", "utr3start", "utr3end", "type"

### Author(s)

Jianhong Ou

### See Also

`CPsite_estimation`, `searchProximalCPs`, `proximalAdj`, `proximalAdjByPWM`, `proximalAdjByCleanUpdTSeq`, `PAscore`,`PAscore2`

[Package InPAS version 1.14.2 Index]