UTR3TotalCoverage {InPAS} | R Documentation

## extract coverage of 3UTR for CP sites prediction

### Description

extract 3UTR coverage from totalCov according and GRanges object utr3.

### Usage

    UTR3TotalCoverage(utr3, totalCov, gcCompensation = NA,
                      mappabilityCompensation = NA,
                      FFT = FALSE, fft.sm.power = 20)

### Arguments

`utr3` | an GRanges object. must be the output of utr3Annotation
`totalCov` | total coverage of each sample. must be the output of totalCoverage
`gcCompensation` | GC compensation vector. Not support yet.
`mappabilityCompensation` | mappability compensation vector. Not support yet.
`FFT` | Use FFT smooth or not.
`fft.sm.power` | the cut-off frequence of FFT smooth.

### Value

a list. level 1: chromosome; level 2: each transcripts; level3: data matrix

### Author(s)

Jianhong Ou

[Package InPAS version 1.14.2 Index]