summary {InterMineR} | R Documentation

## Summarize InterMineR query constraints

### Description

Summarize the information about the constraints contained by an object of the class InterMineR.

### Usage

    summary(object,...)

### Arguments

`object` | an object of the class InterMineR.
`...` | additional arguments affecting the summary produced.

### Value

a data.frame containing the constraints of the InterMineR object as rows. Each constraint is constituted by a path, an operator and one or more values. Multiple values are returned as a comma-separated character string.

### Author(s)

InterMine Team

### See Also

`InterMineR-class`, `setQuery`

### Examples

    # get FlyMine instance
    im.fly = initInterMine(listMines()["FlyMine"])

    # get GO_Gene template query
    qGO_Gene = getTemplateQuery(im.fly, "GO_Gene")

    # modify GO_Gene template query to have more than one GO values
    go.constraints = setConstraints(
      values = list(c("DNA repair", "cellular response to DNA damage stimulus")),
      modifyQueryConstraints = qGO_Gene,
      m.index = 3
    )

    # create 'InterMineR' object
    go.query = setQuery(
      inheritQuery = qGO_Gene,
      where = go.constraints
    )

    # get InterMineR constraint summary
    summary(go.query)

[Package InterMineR version 1.4.1 Index]