samplePointMatrix-class {KCsmart} | R Documentation

## Sample point matrix

### Description

A sample point matrix resulting from a call to calcSpm

### Objects from the Class

Objects can not be created by the user directly but rather through calcSpm.

### Slots

`totalLength`:

  The total length of the sample point matrix, measures in sample points

`maxy`:

  The maximum KC score attained over the sample point matrix

`miny`:

  The minimum KC score attained over the sample point matrix

`sampleDensity`:

  The sample density used to calculate the sample point matrix. ie the distance between two points in the sample point matrix, measured in base pairs.

`sigma`:

  The sigma used for the kernel to calculate the sample point matrix.

`mirrorLocs`:

  The mirror locations list used to calculate the sample point matrix

`probeAnnotation`:

  The original probe annotation from the input data.

`data`:

  The sample point matrix data points in the form of a list where each list element represents a chromosome.

### Methods

plot

  `signature(x = "samplePointMatrix")`: ...

show

  `signature(object = "samplePointMatrix")`: ...

### Examples

    showClass("samplePointMatrix")

[Package KCsmart version 2.40.0 Index]