spmCollection-class {KCsmart} | R Documentation

## Sample point matrix collection

### Description

A sample point matrix collection resulting from a call to calcSpmCollection

### Objects from the Class

Objects can not be created by the user directly but rather through calcSpmCollection.

### Slots

`annotation`:

  The annotation (containing the chromosome and position on the chromosome) for the sample points in the 'data' slot

`data`:

  A matrix with the kernel smoothed estimates of all samples

`cl`:

  A class vector indicating which samples belong to which class

`sampleDensity`:

  The sample density used to calculate the sample point matrix. ie the distance between two points in the sample point matrix, measured in base pairs.

`sigma`:

  The sigma used for the kernel to calculate the sample point matrix.

`mirrorLocs`:

  The mirror locations list used to calculate the sample point matrix

### Methods

show

  `signature(object = "spmCollection")`: ...

### Examples

    showClass("spmCollection")

[Package KCsmart version 2.40.0 Index]