path_genes_by_cell_type {KEGGlincs} | R Documentation

## See how many pathway gene knock-outs are available from data

### Description

Check quantity of data across cell lines available from LINCS corresponding to the pathway of interest

### Usage

    path_genes_by_cell_type(KEGG_mappings, pert_time = 96, get_KOs = FALSE,
      generate_plot = TRUE)

### Arguments

`KEGG_mappings` | KEGG_mappings The data.frame object generated by the function expand_KEGG_mappings
`pert_time` | Choose from (6,24,48,96,120,144,168)
`get_KOs` | Logical indicator to have data frame returned
`generate_plot` | Logical indicator to generate histogram

### Value

A plot depicting percentage of pathway genes knocked-out by cell line and a data frame object listing the genes [by cell line]

### Examples

    p53_KGML <- get_KGML("hsa04115")
    p53_KEGG_mappings <- expand_KEGG_mappings(p53_KGML)

    path_genes_by_cell_type(p53_KEGG_mappings)

[Package KEGGlincs version 1.8.0 Index]