HeatmapView {MAGeCKFlute} | R Documentation

## Draw heatmap

### Description

Draw heatmap

### Usage

    HeatmapView(mat, limit = c(-2, 2),
      colPal = rev(colorRampPalette(c("#c12603", "white", "#0073B6"), space =
      "Lab")(199)), filename = NA, width = NA, height = NA, ...)

### Arguments

`mat` | Matrix like object, each row is gene and each column is sample.
`limit` | Max value in heatmap
`colPal` | colorRampPalette.
`filename` | File path where to save the picture.
`width` | Manual option for determining the output file width in inches.
`height` | Manual option for determining the output file height in inches.
`...` | Other parameters in pheatmap.

### Value

Invisibly a pheatmap object that is a list with components.

### Author(s)

Wubing Zhang

### Examples

    data(mle.gene_summary)
    dd = ReadBeta(mle.gene_summary, organism="hsa")
    gg = cor(dd[,3:ncol(dd)])
    HeatmapView(gg, display_numbers = TRUE)

[Package MAGeCKFlute version 1.2.3 Index]