DensityDiffView {MAGeCKFlute} | R Documentation

## Density plot for beta score deviation between Control and Treatment

### Description

Plot the density of beta score deviation between two samples.

### Usage

    DensityDiffView(beta, ctrlname = "Control", treatname = "Treatment",
      main = NULL, filename = NULL, width = 5, height = 4, ...)

### Arguments

`beta` | Data frame, including `ctrlname` and `treatname` as columns.
`ctrlname` | A character, specifying the name of control sample.
`treatname` | A character, specifying the name of treatment sample.
`main` | As in 'plot'.
`filename` | Figure file name to create on disk. Default filename="NULL", which means no output.
`width` | As in ggsave.
`height` | As in ggsave.
`...` | Other parameters in ggsave.

### Value

An object created by `ggplot`, which can be assigned and further customized.

### Author(s)

Wubing Zhang

### Examples

    data(mle.gene_summary)
    # Read beta score from gene summary table in MAGeCK MLE results
    dd = ReadBeta(mle.gene_summary, organism="hsa")
    # Density plot of beta score deviation between control and treatment
    DensityDiffView(dd, ctrlname = "dmso", treatname = "plx")

[Package MAGeCKFlute version 1.2.3 Index]