TransGeneID {MAGeCKFlute} | R Documentation

## Gene ID conversion between ENTREZID and SYMBOL

### Description

Gene ID conversion between ENTREZID and SYMBOL

### Usage

    TransGeneID(genes, fromType = "Symbol", toType = "Entrez",
      organism = "hsa", useBiomart = FALSE,
      ensemblHost = "www.ensembl.org")

### Arguments

`genes` | A character vector, input genes to be converted.
`fromType` | The input ID type, one of "Symbol" (default), "Entrez" and "Ensembl"; you can also input other valid attribute names for biomaRt.
`toType` | The output ID type, one of "Symbol", "Entrez" (default), "Ensembl"; you can also input other valid attribute names for biomaRt.
`organism` | One of "hsa"(or 'Human'), "mmu"(or 'Mouse'), "bta", "cfa", "ptr", "rno", and "ssc".
`useBiomart` | Boolean, indicating whether use Biomart to do the transformation.
`ensemblHost` | String, specifying ensembl host, you can use 'listEnsemblArchives()' to show all available Ensembl archives hosts.

### Value

A character vector, named by unique input gene ids.

### Author(s)

Wubing Zhang

### See Also

`eg2id`

### Examples

    data(mle.gene_summary)
    TransGeneID(mle.gene_summary$Gene[1:10], organism="hsa")
    TransGeneID(mle.gene_summary$Gene[1:10], organism="hsa", useBiomart = TRUE)

[Package MAGeCKFlute version 1.2.3 Index]