primerAverage {MAST} | R Documentation

## Average expression values for duplicated/redundant genes

### Description

Takes an average, potentially on a different scale given by `fun.natural` of some genes. The average is then transformed with `fun.cycle`.

### Usage

    primerAverage(fd, geneGroups, fun.natural = expavg,
      fun.cycle = logshift)

### Arguments

`fd` | `SingleCellAssay` or subclass
`geneGroups` | `character` naming a column in the `featureData` that keys the duplicates
`fun.natural` | transformation to be used to collapse the duplicate expression values
`fun.cycle` | transformation to be used after collapsing

### Value

averaged version of `fd`.

### Note

This code needs to be tested more extensively after a refactoring. Caveat calculator.

[Package MAST version 1.8.2 Index]