plotMIRAProfiles {MIRA} | R Documentation

## Plot summary methylation profile

### Description

Plot one or multiple methylation profiles. Displays each region set in a different subplot. If you only want to plot certain region sets, subset with the 'featID' parameter.

### Usage

    plotMIRAProfiles(binnedRegDT, featID = unique(binnedRegDT[, featureID]),
      plotType = "line", colBlindOption = FALSE,
      sampleTypeColName = "sampleType")

### Arguments

`binnedRegDT` | A datatable with specific column names containing: bin numbers(binnedRegionDT column), aggregated methylation values (methylProp column), name of the region set (featureID column), case/control column (sampleType column), sample name (sampleName column).
`featID` | Region set names in a single string or vector of strings.
`plotType` | Line or jitter (ggplot2).
`colBlindOption` | If TRUE, function will plot with a color blind friendly palette which could be helpful when plotting multiple colors.
`sampleTypeColName` | character object. The name of the column that contains sample type or condition information (eg case vs control). Line color will be assigned based on this if it is present and there are more than two unique sample types.

### Value

A plot of class "gg"/ "ggplot" that shows MIRA profiles

### Examples

    data("exampleBins", package = "MIRA")
    MIRAplot <- plotMIRAProfiles(binnedRegDT = exampleBins)

[Package MIRA version 1.4.1 Index]