test.pairwise {MSstatsTMT} | R Documentation

## Example of output from groupComparisonTMT function

### Description

It is the output of groupComparisonTMT function, which is the result of group comparions with the output of proteinSummarization function. It should include the columns as below. The variables are as follows:

### Usage

    test.pairwise

### Format

A data frame with 60 rows and 7 variables.

### Details

- Protein : Protein ID

- Label: Label of the pairwise comparision or contrast

- log2FC: Log2 fold change

- SE: Standard error of the comparsion of contrast results

- DF: Degree of freedom

- pvalue: Value of p statistic of the test

- adj.pvalue: adjusted p value

### Examples

    head(test.pairwise)

[Package MSstatsTMT version 1.1.2 Index]