raw.pd {MSstatsTMT} | R Documentation

## Example of output from Proteome Discoverer 2.2 for TMT-10plex experiments.

### Description

Example of Proteome discover PSM sheet. It is the input for PDtoMSstatsTMTFormat function, with annotation file. Annotation file should be made by users. It includes peak intensities for 10 proteins among 15 MS runs with TMT-10plex. The variables are as follows:

### Usage

    raw.pd

### Format

A data frame with 2858 rows and 50 variables.

### Details

- Master.Protein.Accessions

- Protein.Accessions

- Annotated.Sequence

- Charge

- Ions.Score

- Spectrum.File

- Quan.Info

- Channels : 126, ..., 131

### Examples

    head(raw.pd)

[Package MSstatsTMT version 1.1.2 Index]