# Generated by roxygen2: do not edit by hand

export(MaxQtoMSstatsTMTFormat)
export(PDtoMSstatsTMTFormat)
export(SpectroMinetoMSstatsTMTFormat)
export(dataProcessPlotsTMT)
export(groupComparisonTMT)
export(proteinSummarization)
import(dplyr)
import(ggplot2)
import(limma)
import(lme4)
import(tidyr)
importFrom(MSstats,dataProcess)
importFrom(data.table,":=")
importFrom(data.table,as.data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setkey)
importFrom(dplyr,"%>%")
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(grDevices,dev.off)
importFrom(grDevices,hcl)
importFrom(grDevices,pdf)
importFrom(graphics,axis)
importFrom(graphics,image)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,title)
importFrom(matrixStats,colMedians)
importFrom(nlme,fixed.effects)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(stats,aggregate)
importFrom(stats,anova)
importFrom(stats,coef)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,medpolish)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pt)
importFrom(stats,t.test)
importFrom(stats,xtabs)
importFrom(tidyr,gather)
importFrom(tidyr,spread)
importFrom(utils,read.table)
importFrom(utils,sessionInfo)
importFrom(utils,write.table)
