labelSummary {MetaCyto} | R Documentation

## Make a summary for the labels (cell populations) identified in different cytometry panels.

### Description

A function that summarizes the labels (cell populations) identified in different cytometry panels.

### Usage

    labelSummary(allData, minStudy = 2)

### Arguments

`allData` | A table containing the summary statistics of cell populations. Often is the output of the function "collectData".
`minStudy` | Minimum number of cytometry panels a label should appear in. Set it >1 to find cell populations identified in more than 1 cytometry panel for meta-analysis.

### Value

A data frame summarizing the labels identified in different cytometry panels.

### Examples

    fn=system.file("extdata","",package="MetaCyto")
    files=list.files(fn,pattern="cluster_stats_in_each_sample",
                     recursive=TRUE,full.names=TRUE)
    fcs_stats=collectData(files,longform=TRUE)
    label_summary = labelSummary(allData=fcs_stats,minStudy=2)

[Package MetaCyto version 1.4.1 Index]