FOXA1_rGADEM {MotIV} | R Documentation

## Dataset for FOXA1

### Description

This dataset contains results obtained by rGADEM for the FOXA1 transcription factor.

### Usage

    gadem

### References

http://genomebiology.com/2008/9/9/R137

### Examples

    #####Database and Scores#####
    path <- system.file(package="MotIV")
    data(jaspar2010)
    data(jaspar2010_scores)

    #####Input#####
    data(FOXA1_rGADEM)
    motifs <- getPWM(gadem)
    motifs.trimed <- lapply(motifs,trimPWMedge, threshold=1)

    #####Analysis#####
    foxa1.analysis.jaspar <- motifMatch(inputPWM=motifs,align="SWU",cc="PCC",database=jaspar,DBscores=jaspar.scores,top=5)
    summary(foxa1.analysis.jaspar )

[Package MotIV version 1.38.0 Index]