parserOutputTFSummary {PhenStat} | R Documentation

## Method "parserOutputTFSummary"

### Description

Parsers model output summary from TF framework and returns it in readable named vector format

### Usage

        parserOutputTFSummary(linearRegressionOutput)

### Arguments

`linearRegressionOutput` | linear regression output that comes from the TF method; mandatory argument

### Value

Returns a named vector with model output summary results

### Author(s)

Natalja Kurbatova, Natasha Karp, Jeremy Mason

### References

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

### See Also

`PhenTestResult`

### Examples

        file <- system.file("extdata", "test6_RR.csv", package="PhenStat")
        test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
                testGenotype="Oxr1/Oxr1")
        result <- PhenStat:::testDataset(test,
                depVariable="Ca",
                method="TF",
                dataPointsThreshold=2)
        linearRegressionOutput <- PhenStat:::analysisResults(result)
        PhenStat:::parserOutputTFSummary(linearRegressionOutput)

[Package PhenStat version 2.18.0 Index]