assayDataAmp {R453Plus1Toolbox} | R Documentation

## Access the amplicon data of an AVASet.

### Description

Similar to `assayData` of the Biobase ExpressionSet, this function returns the assay data of the amplicon slot of an instance of the AVASet.

### Usage

        assayDataAmp(object)

### Arguments

`object` | An `link{AVASet-class}` object.

### Value

The assay data of the amplicon slot consists of a list of two data frames with the number of forward and reverse reads of all amplicons for each sample (see `AVASet-class` for details).

### Author(s)

Christoph Bartenhagen

### See Also

`fDataAmp`, `featureDataAmp`, `AVASet-class`

### Examples

        # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
        data(avaSetExample)

        # show contents of amplicon assay data
        assayDataAmp(avaSetExample)

[Package R453Plus1Toolbox version 1.32.0 Index]