Package: REDseq
Type: Package
Title: Analysis of high-throughput sequencing data processed by
        restriction enzyme digestion
Version: 1.28.0
Date: 2013-10-21
Author: Lihua Julie Zhu and Thomas Fazzio
Maintainer: Lihua Julie Zhu <julie.zhu@umassmed.edu>
Depends: R (>= 2.15.0), BiocGenerics (>= 0.1.0),
        BSgenome.Celegans.UCSC.ce2, multtest, Biostrings, BSgenome,
        ChIPpeakAnno
Imports: BiocGenerics, AnnotationDbi, Biostrings, ChIPpeakAnno,
        graphics, IRanges (>= 1.13.5), multtest, stats, utils
biocViews: Sequencing, SequenceMatching, Preprocessing
Description: The package includes functions to build restriction enzyme cut site (RECS) map, distribute mapped sequences on the map with five different approaches, find enriched/depleted RECSs for a sample, and identify differentially enriched/depleted RECSs between samples.
License: GPL (>=2)
git_url: https://git.bioconductor.org/packages/REDseq
git_branch: RELEASE_3_8
git_last_commit: 6278804
git_last_commit_date: 2018-10-30
Date/Publication: 2018-10-30
NeedsCompilation: no
Packaged: 2018-10-31 01:35:47 UTC; biocbuild
Built: R 3.5.1; ; 2018-10-31 11:43:21 UTC; windows
