109db95eb1b4072ab2573ee4f23ade1b *CITATION
0804670d478361620c3a8556a3ecd007 *DESCRIPTION
48fd35a1dbd2ce02865d24d3071c51f4 *INDEX
8e6cc1c229d092ee16a241302a5cf243 *Meta/Rd.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
8e3b6e7b7bbe43ef97b7cc48f04b6c85 *Meta/hsearch.rds
2aa9aa48a688b484c282f646f6d6b68d *Meta/links.rds
6911e1577afe9d38f6fc9cdb6c3f5a46 *Meta/nsInfo.rds
f2a7a8f5726732740bc97e82cb31c9d3 *Meta/package.rds
474d859b5577467fddbb93f30649c4a3 *Meta/vignette.rds
49d1d083664ad1d9722b293e2ee397d9 *NAMESPACE
df7259a15a2300b75b200810bffe7973 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/RIPSeeker
a73faccc2089d1eb54f4fbb786bca746 *R/RIPSeeker.rdb
f823be4d8a125ca0ee2b5a45fe0d400c *R/RIPSeeker.rdx
61951fe5d2ad133d3316e7e15d418f32 *doc/RIPSeeker.R
c782956ce9cd907ba4c4cc5d8830e930 *doc/RIPSeeker.Rnw
b4b0f633175cea5d149fab8757c0f270 *doc/RIPSeeker.pdf
7c6476d9948a7587e22e1c0c03f6bdd7 *doc/index.html
08bb4ffc1327175d17a9a8ee80ad5b29 *extdata/PRC2/SRR039210_processed_tophat/accepted_hits_noDup_sel_chrX.bam
f35733b0cf6b993aff491129f38ad123 *extdata/PRC2/SRR039211_processed_tophat/accepted_hits_noDup_sel_chrX.bam
2e30a92bc78458afcd3fee079c0da8fb *extdata/PRC2/SRR039214_processed_tophat/accepted_hits_noDup_sel_chrX.bam
67cd63da07d23897f58d794cca23dca5 *extdata/RIPregions/RIPregion_biorep1.gff3
bd9f4a81b7b3b6aac36c49083039e594 *extdata/RIPregions/RIPregion_biorep2.gff3
7df758adaaf5b6d487ac22e4dba6c31e *extdata/pairedend/ex1.bam
3c124ff06331bf53dc2222d882769f50 *help/AnIndex
87f221d3527d1452c1a3b005b6da4da7 *help/RIPSeeker.rdb
d20109f28c330e510a267289f99d5592 *help/RIPSeeker.rdx
1b50046cd1d023973ef4ab48979d86ef *help/aliases.rds
1234aa287e4c50ed0c2115d5d5423146 *help/paths.rds
8f04a94ce8579a2da3d77fdb14225062 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a5ec23cfdfba70c6725b1373d2f3f6f3 *html/RIPSeeker-package.html
a9f835fc85d7df88e55d03baaa72b6f7 *html/addDummyProb.html
6ad2de9424cd60fc430d076a5900b264 *html/addPseudoAlignment.html
67b5c22a21c78901143a68ee00bd765c *html/annotateRIP.html
4bb678c710ba75dcf24aa583700a4f88 *html/binCount.html
499d9a77fac10ce98bf8cc6f64f6cfdc *html/combineAlignGals.html
609046ed8bd8438647b8e96550d95742 *html/combineRIP.html
bb1c7fd66b8d73404ff9b1343cf026aa *html/computeLogOdd.html
371b0521c991916ba5504c05b7ed216d *html/computeRPKM.html
9c4ea8fec78b0a30618900d5276657b3 *html/disambiguateMultihits.html
ad2c41e655b5126913d0aabaaa715b84 *html/empiricalFDR.html
703adae5a7f7c51a93c4f585c8107d5c *html/evalBinSize.html
3c7091aa0b738fc8a9b2fc54480ab8a8 *html/exportGRanges.html
2e60882d4ecdf141b8dbebb0d2acc9ed *html/galp2gal.html
3f97024a14a1884a8a7a2c3916ed5d6f *html/getAlignGal.html
a6ca0e751f44bac11307f14ac1365f25 *html/logScoreWithControl.html
fd0cbf39ff401142ff07e004f398e768 *html/logScoreWithoutControl.html
45ebcc77184198d05c8fffe7c6d03099 *html/mainSeek.html
a955012309e2008695ec716cc26a1298 *html/mainSeekSingleChrom.html
189ea4db5cfed8c10f24a668e7f1b78f *html/nbh.GRanges.html
3a8de2d22105acd37b5435388664bc8b *html/nbh.html
39ef515a424dd58ffb69b89559781a16 *html/nbh.integer.html
bed670701e04bb8cd348dffb821e6893 *html/nbh_chk.html
f3d7a0a5dacc42f6a4ce1c56bfaa8735 *html/nbh_em.html
4316c2f031470de541d6e4d71d4f2361 *html/nbh_gen.html
1288d4a4315f3eab0876cc0771de78f1 *html/nbh_init.html
96e7d869d501fba77189dfbffb04bdfb *html/nbh_vit.html
6ccdd9960a83118335bd7b7dd44c0c4b *html/nbm_chk.html
bb0fae9cc7dabe5383e0ed1e2253f8dd *html/nbm_em.html
d5f2fdcf65cbeda80208c0628e756544 *html/plotCoverage.html
34f67085490faa9c2507f916da500554 *html/plotStrandedCoverage.html
13590510f4f6a36006d69784be74c26a *html/randindx.html
238febef8940d4b7a2d2f60d5fda2145 *html/ripSeek.html
e94d6e1df2fe0fe75ae4134cf54bacb3 *html/rulebaseRIPSeek.html
38a25397f9db65f385ac813834fa2c19 *html/scoreMergedBins.html
7388a9f050ad35dc0a3f53833c889b76 *html/seekRIP.html
f635fd758b5b782a1544ecfc6925579c *html/selectBinSize.html
40b1fea9ea66c336ba124c7d33f70a09 *html/statdis.html
4cb968bf4b45e42355954bb8a8b2070d *html/viewRIP.html
