syntheticNucleosomeReads {RJMCMCNucleosomes} | R Documentation

## Simulated dataset of reads generated by `nucleoSim` package (for demo purpose).

### Description

A `list` of `class` "syntheticNucReads" which contains the information about synthetic reads related to nucleosomes. The datset has been created using a total of 300 well-positioned nucleosomes, 30 fuzzy nucleosomes with variance of reads following a Normal distribution.

### Usage

    data(syntheticNucleosomeReads)

### Format

A `list` containing:

- `call` the called that generated the dataset.

- `dataIP` a `data.frame` with the chromosome name, the starting and ending positions and the direction of all forward and reverse reads for all well-positioned and fuzzy nucleosomes. Paired-end reads are identified with an unique id.

- `wp` a `data.frame` with the positions of all the well-positioned nucleosomes, as well as the number of paired-reads associated to each one.

- `fuz` a `data.frame` with the positions of all the fuzzy nucleosomes, as well as the number of paired-reads associated to each one.

- `paired` a `data.frame` with the starting and ending positions of the reads used to generate the paired-end reads. Paired-end reads are identified with an unique id.

### Value

A `list` containing:

- `call` the called that generated the dataset.

- `dataIP` a `data.frame` with the chromosome name, the starting and ending positions and the direction of all forward and reverse reads for all well-positioned and fuzzy nucleosomes. Paired-end reads are identified with an unique id.

- `wp` a `data.frame` with the positions of all the well-positioned nucleosomes, as well as the number of paired-reads associated to each one.

- `fuz` a `data.frame` with the positions of all the fuzzy nucleosomes, as well as the number of paired-reads associated to each one.

- `paired` a `data.frame` with the starting and ending positions of the reads used to generate the paired-end reads. Paired-end reads are identified with an unique id.

[Package RJMCMCNucleosomes version 1.6.0 Index]