compareHits {RNAither} | R Documentation

## Searching for common hits between different scoring methods

### Description

Searches for common hits between different scoring methods.

### Usage

    compareHits(hitVec1, hitVec2, namesHitVec1, namesHitVec2)

### Arguments

`hitVec1, hitVec2` | the two binary hit vectors to be compared
`namesHitVec1, namesHitVec2` | the names of the siRNAs corresponding to the hit vectors

### Value

Returns a character vector indicating which siRNAs are identified as hits in two different hit scoring schemes.

### See Also

`vennDiag` , `Ttest`, `MannWhitney`

### Examples

    data(scoredDataset1, package="RNAither")
    data(pValVec1, package="RNAither")

    data(scoredDataset2, package="RNAither")
    data(pValVec2, package="RNAither")

    ##for details on the generation of pValVec and scoredDataset,
    ##see the examples of the functions Ttest and MannWhitney linked above.

    scoredHits1 <- hitselectionPval(scoredDataset1, pValVec1, "SigIntensity", "Hits1", 0.05,
    "GeneName", "pvalue_testfile1.txt")
    scoredHits2 <- hitselectionPval(scoredDataset2, pValVec2, "SigIntensity", "Hits2", 0.05,
    "GeneName", "pvalue_testfile2.txt")

    hitVector1 <- scoredHits1[[2]]
    hitVector2 <- scoredHits2[[2]]

    common_hits <- compareHits(hitVector1, hitVector2, names(hitVector1), names(hitVector2))

[Package RNAither version 2.30.1 Index]