makeBoxplotControls {RNAither} | R Documentation

## Generate a boxplot of the data vs. the controls

### Description

Generates a boxplot of intensity values of negative controls, positive controls and experimental data.

### Usage

    makeBoxplotControls(header, dataset, channel, plotTitle, showPlot)

### Arguments

`header` | the header of a dataset file generated with `generateDatasetFile`
`dataset` | an R data frame generated with `generateDatasetFile`
`channel` | a character string specifying the column whose values will be used for the boxplot
`plotTitle` | the plot title
`showPlot` | 0 or 1. 1 will open one or several plot windows in the R GUI, 0 will only save the plot(s) without opening windows.

### Value

A boxplot of intensity values of negative controls, positive controls and experimental data will be saved as a pdf and a png file named after the experiment name specified in the header concatenated with the `plotTitle`.

The function returns the plot name.

### See Also

`makeBoxplotControlsPerScreen`, `makeBoxplotControlsPerPlate`, `makeBoxplotPerPlate`, `makeBoxplotPerScreen`

### Examples

    data(exampleHeader, package="RNAither")
    data(exampleDataset, package="RNAither")

    makeBoxplotControls(header, dataset, "SigIntensity", "Data vs. Controls", 1)

[Package RNAither version 2.30.1 Index]