FirehoseGISTIC-class {RTCGAToolbox} | R Documentation

## An S4 class to store processed copy number data. (Data processed by using GISTIC2 algorithm)

### Description

An S4 class to store processed copy number data. (Data processed by using GISTIC2 algorithm)

### Usage

    ## S4 method for signature 'FirehoseGISTIC'
    isEmpty(x)

    ## S4 method for signature 'FirehoseGISTIC'
    updateObject(object, ..., verbose = FALSE)

### Arguments

`x` | A FirehoseGISTIC class object
`object` | A `FirehoseGISTIC` object
`...` | additional arguments for updateObject
`verbose` | logical (default FALSE) whether to print extra messages

### Methods (by generic)

- `isEmpty`: check whether the FirehoseGISTIC object has data in it or not

- `updateObject`: Update an old FirehoseGISTIC object to the most recent API

### Slots

`Dataset`

  Cohort name

`AllByGene`

  A data frame that stores continuous copy number

`ThresholdedByGene`

  A data frame for discrete copy number data

`Peaks`

  A data frame storing GISTIC peak data. See getGISTICPeaks.

[Package RTCGAToolbox version 2.12.1 Index]