RnBClusterRun-class {RnBeads} | R Documentation

## RnBClusterRun Class

### Description

A class for configuring and running RnBeads on a scientific compute cluster.

### Slots

`architecture`

  A `ClusterArchitecture` object managing the settings for a scientific compute cluster

`modules`

  A vector of pipeline modules

`module.res.req`

  Stores the resource requirements for each module. A list containing named vectors for the resources

`module.num.cores`

  Stores the number of cores for each module

### Methods

`setModuleResourceRequirements,RnBClusterRun,character,character-method`

  Sets the resource requirements for the different pipeline modules

`setModuleNumCores,RnBClusterRun,integer,character-method`

  Sets the number of cores used by the different pipeline modules

`getModuleNumCores,RnBClusterRun-method`

  Gets the number of cores used by the different pipeline modules

`run,RnBClusterRun-method`

  Submit the pipeline modules to the cluster

### Author(s)

Fabian Mueller

[Package RnBeads version 2.0.1 Index]