rnb.region.types {RnBeads} | R Documentation

## rnb.region.types

### Description

Gets the supported region annotations for a given genome assembly.

### Usage

    rnb.region.types(assembly = "hg19")

### Arguments

`assembly` | Genome assembly of interest. See `rnb.get.assemblies` for the list of supported genomes.

### Value

Region types supported by RnBeads in the form of a `character` vector. The built-in ones are `"cpgislands"`, `"genes"`, `"promoters"` and `"tiling"`. The names of all custom region definitions are also included in the returned vector.

### Author(s)

Yassen Assenov

### See Also

`rnb.get.annotation`, `rnb.set.annotation`

### Examples

    "promoters" %in% rnb.region.types() # TRUE

[Package RnBeads version 2.0.1 Index]