rqcCycleQualityCalc {Rqc} | R Documentation

## Per cycle quality plot

### Description

Creates a graph of per cycle quality.

### Usage

    rqcCycleQualityCalc(rqcResultSet)

    rqcCycleQualityPlot(rqcResultSet)

### Arguments

`rqcResultSet` | list of `RqcResultSet` objects created by `rqc` and `rqcQA` functions.

### Value

Plot object from `ggplot` function.

### Functions

- `rqcCycleQualityCalc`: calculates necessary statistics

### Author(s)

Welliton Souza

### Examples

    checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
      folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
      files <- list.files(full.names=TRUE, path=folder)
      rqcResultSet <- rqcQA(files, workers=1)
    }, keep="rqcResultSet")
    rqcCycleQualityPlot(rqcResultSet)

[Package Rqc version 1.16.2 Index]