rqcCycleBaseCallsCalc {Rqc} | R Documentation

## Per cycle base calls plot

### Description

Creates a bar graph of per cycle base calls.

### Usage

    rqcCycleBaseCallsCalc(rqcResultSet)

    rqcCycleBaseCallsLinePlot(rqcResultSet)

    rqcCycleBaseCallsPlot(rqcResultSet)

### Arguments

`rqcResultSet` | list of `RqcResultSet` objects created by `rqc` and `rqcQA` functions.

### Value

Plot object from `ggplot` function.

### Functions

- `rqcCycleBaseCallsCalc`: calculates necessary statistics

- `rqcCycleBaseCallsLinePlot`: creates a line graph

### Author(s)

Welliton Souza

### Examples

    checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
      folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
      files <- list.files(full.names=TRUE, path=folder)
      rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
    }, keep="rqcResultSet")
    rqcCycleBaseCallsPlot(rqcResultSet)

[Package Rqc version 1.16.2 Index]