rqcReport {Rqc} | R Documentation

## Quality Control HTML Report

### Description

Generates an HTML report file.

### Usage

    rqcReport(rqcResultSet, outdir = tempdir(), file = "rqc_report",
      keepMD = FALSE, templateFile = system.file("templates", package = "Rqc",
      "rqc_report.Rmd"))

### Arguments

`rqcResultSet` | list of `RqcResultSet` objects created by `rqc` and `rqcQA` functions.
`outdir` | output directory path. It is created a temporary directory by default.
`file` | output file name.
`keepMD` | If true Rqc does not delete markdown file. `knit` function takes RMarkdown template file (within package) and generates a temporary Markdown file. Next `markdownToHTML` function takes this markdown file and creates final HTML file.
`templateFile` | Path of Rmarkdown file as Rqc web report template.

### Details

Also creates a directory called "figure" in `outdir` path.

### Value

Report file path.

### Author(s)

Welliton Souza

### See Also

`rqc`

`rqcQA`

### Examples

    options(device.ask.default = FALSE)
    checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
      folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
      files <- list.files(full.names=TRUE, path=folder)
      rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
    }, keep="rqcResultSet")
    reportFile <- rqcReport(rqcResultSet)
    browseURL(reportFile)

[Package Rqc version 1.16.2 Index]