rqcCycleGCCalc {Rqc} | R Documentation

## Per cycle percentual GC plot

### Description

Creates a line graph of per cycle percentual GC.

### Usage

    rqcCycleGCCalc(rqcResultSet)

    rqcCycleGCPlot(rqcResultSet)

### Arguments

`rqcResultSet` | list of `RqcResultSet` objects created by `rqc` and `rqcQA` functions.

### Value

Plot object from `ggplot` function.

### Functions

- `rqcCycleGCCalc`: calculates necessary statistics

### Author(s)

Welliton Souza

### Examples

    checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
      folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
      files <- list.files(full.names=TRUE, path=folder)
      rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
    }, keep="rqcResultSet")
    rqcCycleGCPlot(rqcResultSet)

[Package Rqc version 1.16.2 Index]