sc3_plot_de_genes {SC3} | R Documentation

## Plot expression of DE genes of the clusters identified by `SC3` as a heatmap

### Description

`SC3` plots gene expression profiles of the 50 genes with the lowest p-values.

### Usage

    sc3_plot_de_genes.SingleCellExperiment(object, k, p.val, show_pdata)

    ## S4 method for signature 'SingleCellExperiment'
    sc3_plot_de_genes(object, k, p.val = 0.01,
      show_pdata = NULL)

### Arguments

`object` | an object of 'SingleCellExperiment' class
`k` | number of clusters
`p.val` | significance threshold used for the DE genes
`show_pdata` | a vector of colnames of the pData(object) table. Default is NULL. If not NULL will add pData annotations to the columns of the output matrix

[Package SC3 version 1.10.1 Index]