junctionCompatible {SGSeq} | R Documentation

## Compatible fragment counts for splice junctions

### Description

Identify fragments compatible with splice junctions.

### Usage

    junctionCompatible(junctions, frag_exonic, frag_intron, min_anchor,
      counts = TRUE)

### Arguments

`junctions` | `IRanges` of splice junctions
`frag_exonic` | `IRangesList` of exonic regions, one entry per fragment
`frag_intron` | `IRangesList` of introns, one entry per fragment
`min_anchor` | Integer specifying minimum anchor length
`counts` | Logical indicating whether counts or indices of compatible fragments should be returned

### Value

Counts or list of indices of compatible fragments

### Author(s)

Leonard Goldstein

[Package SGSeq version 1.16.2 Index]