c3bde156c0761d9578badd79a0161031 *CITATION
8c9e8d4648e3f28983e35f5b2ea78c5c *DESCRIPTION
79c58e2ad89d35e1a68916a9d5ba0b79 *INDEX
0db46ba205dcfbadd782080c05f59dc6 *Meta/Rd.rds
e627b43994166aadf6fce4f86f7588bc *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
d278606523b6687de34ec9f01f767cd3 *Meta/hsearch.rds
a4f3f13073b0ee22b919aec9879d1a0d *Meta/links.rds
ce3d74069cfc176b66c648a6e4faa132 *Meta/nsInfo.rds
dbcc8e6dd50dd3a4d2a285f7c8795b88 *Meta/package.rds
a7f300f537c505e5f0d77ac389c3e8f3 *Meta/vignette.rds
8ec02bf68dd22ce6d53fb4e6e427a77f *NAMESPACE
a0fddb94813c5ed2c6f607d24b436efd *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/SGSeq
b55cf2da11d0f05fa29f5b210439faa5 *R/SGSeq.rdb
ea9a82015235b1c2b0bccf63523b04ea *R/SGSeq.rdx
c10f37cba1634dd2223ba1f6db2a0046 *data/Rdata.rdb
08b627c0a0f42a0462cc35132293c815 *data/Rdata.rds
76e7326d09b1e5e9f3f7416f615a0b37 *data/Rdata.rdx
2ab20d812cb9c438c10569f568830474 *doc/SGSeq.R
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26a827488ea280a0a53b9fdc2455f4e6 *doc/index.html
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10e437ecd83a1648f6feb28efd666a3d *extdata/bams/N1.bam.bai
6ae387d023817532da8ab3273731c6b7 *extdata/bams/N2.bam
7bc7623be9eb5b52f7d272b1e54d7c1f *extdata/bams/N2.bam.bai
e07e5bf79859b2028cb402c079577316 *extdata/bams/N3.bam
20cd985ef7ffa218da184f187ce50dea *extdata/bams/N3.bam.bai
b0a8a2796e4cd67d1c5231481dc298f7 *extdata/bams/N4.bam
c14641aca82d7b303f9ab448ce5b4f2e *extdata/bams/N4.bam.bai
dab9dc6d74c1e618b960baa0148740af *extdata/bams/T1.bam
f1bd4bdf90f83ca520ab1fba63cea726 *extdata/bams/T1.bam.bai
6e43c101708a4040937e389b9888832b *extdata/bams/T2.bam
b48cfbe384de76d521dff37845bb811b *extdata/bams/T2.bam.bai
1751240dde82ab77847b18cc93ce4b31 *extdata/bams/T3.bam
b0c6a086071d7f7d5c5153cfc1778147 *extdata/bams/T3.bam.bai
0ed841f711101c6ed48133d5cf35c9df *extdata/bams/T4.bam
33e452914d0a92a7287b5902f7a223d3 *extdata/bams/T4.bam.bai
7d31b555fc3a0ef493db24637a69d7b5 *help/AnIndex
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622914d277ac8e554e0df2d3439a2d0e *help/aliases.rds
fdc907a8e52b2f12988b0928bd37d384 *help/paths.rds
53056addb8ee13948b8ea477c229f74a *html/00Index.html
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809138734ee6a407a5247b78b827b2d0 *html/SGSegments.html
2553e87ff8fab95e279dddcfc2131b8e *html/SGVariantCounts.html
548de0a5d1542e40e6791afd2cd32c02 *html/SGVariants.html
bb7a478485f0505c43f5af42d407a588 *html/TxFeatures.html
444c4c81326ff02cee05f25179fa530c *html/analyzeFeatures.html
a529b8ad7d22000470907c8ab72f51e7 *html/analyzeVariants.html
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6201ea6e2d01c3defc16c1b11b8a9da1 *html/filterFeatures.html
34f54b97c594d9c87daa7e61cfe40ab6 *html/findOverlapsRanges.html
3541a14bdcc25bd98c410acee3ceb185 *html/findSGVariants.html
7b706c9db22ae9477ee0e8ba9ac1b1af *html/getBamInfo.html
445622b57a6c30409e6fcb30ed31a79f *html/getSGFeatureCounts.html
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8fb5967b46c0f2e83a56eb3ca2e23c50 *html/gr.html
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62e8c19d1ad5c185a6b7e4e2f8c9d60f *html/makeVariantNames.html
e4cdfa6248f64ac450d5240013d50d0f *html/mergeTxFeatures.html
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4a624458850ecb53bf745276dc5d367d *html/plotSpliceGraph.html
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c9b28f65fe2e8a9891930dec0e56342b *html/predictCandidatesInternal.html
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0cd91f32eb4f9e704bd350e9c279ff46 *html/predictJunctions.html
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7329ea8f7c7b2d9198b155055e1ec27b *html/predictVariantEffects.html
db8e9ee82375c2ffbeee0dfe35fd4470 *html/processTerminalExons.html
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0a1dd23291d0bf9ca3a1b2344b449ded *html/sgf_ann.html
5f629e66ba6afedb040aaed90916a922 *html/sgf_pred.html
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91435c388a3b9ac94b784ec1075b5605 *html/sgvc_ann.html
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015e60ee77fdd5766c815204a5276a59 *html/sgvc_pred.html
9ff41f177ef192f007582dc57bc072d2 *html/sgvc_pred_from_bam.html
9d3a757510fae7526b143afbe3d80eef *html/si.html
052eedd04835909411904532ddc90ffd *html/slots.html
777f3415cf6e4c1a4bee3fbe71f95bb3 *html/splicesiteOverlap.html
dcbe2da5d26601b89f4329e620de54c0 *html/tx.html
79a6357e9755872127401d0b9242f4b9 *html/txf_ann.html
4ddcc9071d2e370105919bec98756e63 *html/txf_pred.html
22414861c410e97871fa59a22aeebf02 *html/updateObject.html
916134d923047d0d83dd3cac336afac2 *scripts/createExampleData.R
62e6eb32b9d91e2d2e22f8a0ebe3999b *unitTests/test_analyzeFeatures.R
41062843ebebbec77ddf6fbc1eebe14b *unitTests/test_analyzeVariants.R
1a72ecb53227d3f1a1b3ea90297e911f *unitTests/test_annotate.R
445456f7b917f405ff4ffa9c6f0c305a *unitTests/test_classes.R
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018d012a9bc57431328f9574ad429925 *unitTests/test_getBamInfo.R
49e19e07becae41efb382ed9f01719b2 *unitTests/test_getSGFeatureCounts.R
66d59bb78d566b15751680e3d3fa1c1d *unitTests/test_getSGVariantCounts.R
82ac16fa44fac098647f31ac89dfa696 *unitTests/test_mergeTxFeatures.R
9212fb3c627df1a8f0db8e52fa7b5da2 *unitTests/test_predictTxFeatures.R
75201f127c6a3884632ed88c88714ee0 *unitTests/test_predictVariantEffects.R
