# Generated by roxygen2: do not edit by hand

export("associations<-")
export("data_split<-")
export("eval_data<-")
export("filt_feat<-")
export("label<-")
export("meta<-")
export("model_list<-")
export("norm_feat<-")
export("orig_feat<-")
export("physeq<-")
export("pred_matrix<-")
export(accessSlot)
export(add.meta.pred)
export(assoc_param)
export(associations)
export(check.associations)
export(check.confounders)
export(create.data.split)
export(create.label)
export(data_split)
export(eval_data)
export(evaluate.predictions)
export(feature_type)
export(feature_weights)
export(filt_feat)
export(filt_params)
export(filter.features)
export(filter.label)
export(get.filt_feat.matrix)
export(get.norm_feat.matrix)
export(get.orig_feat.matrix)
export(label)
export(make.predictions)
export(meta)
export(model.evaluation.plot)
export(model.interpretation.plot)
export(model_list)
export(model_type)
export(models)
export(norm_feat)
export(norm_params)
export(normalize.features)
export(orig_feat)
export(physeq)
export(pred_matrix)
export(read.label)
export(read.lefse)
export(select.samples)
export(siamcat)
export(siamcat.to.lefse)
export(siamcat.to.maaslin)
export(summarize.features)
export(train.model)
export(validate.data)
export(weight_matrix)
exportClasses(associations)
exportClasses(data_split)
exportClasses(eval_data)
exportClasses(filt_feat)
exportClasses(label)
exportClasses(model_list)
exportClasses(norm_feat)
exportClasses(pred_matrix)
exportClasses(siamcat)
import(LiblineaR)
import(glmnet, except = 'auc')
import(methods)
import(mlr)
import(phyloseq)
importFrom(PRROC,pr.curve)
importFrom(ParamHelpers,makeDiscreteParam)
importFrom(ParamHelpers,makeNumericParam)
importFrom(ParamHelpers,makeParamSet)
importFrom(RColorBrewer,brewer.pal)
importFrom(RColorBrewer,brewer.pal.info)
importFrom(beanplot,beanplot)
importFrom(corrplot,colorlegend)
importFrom(corrplot,corrplot)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,gray)
importFrom(grDevices,pdf)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,box)
importFrom(graphics,boxplot)
importFrom(graphics,grid)
importFrom(graphics,hist)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rect)
importFrom(graphics,segments)
importFrom(graphics,strheight)
importFrom(graphics,stripchart)
importFrom(graphics,strwidth)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(grid,plotViewport)
importFrom(grid,popViewport)
importFrom(grid,pushViewport)
importFrom(gridBase,baseViewports)
importFrom(gridExtra,grid.table)
importFrom(gridExtra,ttheme_minimal)
importFrom(infotheo,condentropy)
importFrom(infotheo,discretize)
importFrom(matrixStats,colRanks)
importFrom(matrixStats,rowMaxs)
importFrom(matrixStats,rowMedians)
importFrom(matrixStats,rowQuantiles)
importFrom(matrixStats,rowSds)
importFrom(pROC,roc)
importFrom(scales,alpha)
importFrom(stats,addmargins)
importFrom(stats,binomial)
importFrom(stats,coef)
importFrom(stats,coefficients)
importFrom(stats,confint)
importFrom(stats,cor)
importFrom(stats,fisher.test)
importFrom(stats,glm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,predict)
importFrom(stats,profile)
importFrom(stats,qqplot)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,wilcox.test)
importFrom(stringr,str_extract_all)
importFrom(utils,askYesNo)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(utils,write.table)
