BuettnerFlorian {SIMLR} | R Documentation

## test dataset for SIMLR

### Description

example dataset to test SIMLR from the work by Buettner, Florian, et al.

### Usage

    data(BuettnerFlorian)

### Format

gene expression measurements of individual cells

### Value

list of 6: in_X = input dataset as an (m x n) gene expression measurements of individual cells, n_clust = number of clusters (number of distinct true labels), true_labs = ground true of cluster assignments for each of the n_clust clusters, seed = seed used to compute the results for the example, results = result by SIMLR for the inputs defined as described, nmi = normalized mutual information as a measure of the inferred clusters compared to the true labels

### Source

Buettner, Florian, et al. "Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells." Nature biotechnology 33.2 (2015): 155-160.

[Package SIMLR version 1.8.1 Index]