findCompatibleEvents {SPLINTER} | R Documentation

## findCompatibleEvents

### Description

Which transcript contains the event? Each event has 2 possibilities, as long as the transcript fulfills one, it passes the test Has to be exact (inner junctions)

### Usage

    findCompatibleEvents(tx, tx2 = NULL, roi, sequential = TRUE,
      verbose = FALSE)

### Arguments

`tx` | GRangesList object of transcripts
`tx2` | optional GRangesList object of transcripts if tx is list of cds
`roi` | `makeROI` object contaning event information
`sequential` | logical. Exons have to appear sequentially to be considered compatible
`verbose` | logical. printouts and messages.

### Details

Seperates into event/region1 and 2 for the alternative case

### Value

list of length 4
(1) GRangesList
(2) Hits status [c]=coding; [nc]=non-coding
(3) ct - compatible transcripts
(4) tt - total transcripts

### Author(s)

Diana Low

### Examples

    compatible_cds <- findCompatibleEvents(valid_cds,roi=roi,verbose=TRUE)

[Package SPLINTER version 1.8.1 Index]