checkPrimer {SPLINTER} | R Documentation

## checkPrimer

### Description

checkPrimer

### Usage

    checkPrimer(pp, genome, roi = NULL)

### Arguments

`pp` | data.frame defining primers, or output of `callPrimer3`. minimal columns = PRIMER_LEFT_SEQUENCE,PRIMER_RIGHT_SEQUENCE
`genome` | BSgenome object
`roi` | `makeROI` object

### Value

list of GRanges with primer locations

### Author(s)

Diana Low

### Examples

    # create a primer pair
    roi
    primer_pair <- data.frame(PRIMER_LEFT_SEQUENCE="agctcttgaaattggagctgac",
                              PRIMER_RIGHT_SEQUENCE="cttagaaagaacaggaaatcc",
                              stringsAsFactors=FALSE)

[Package SPLINTER version 1.8.1 Index]