$,LinearEmbeddingMatrix-method	LEM-getset
$<-,LinearEmbeddingMatrix-method	LEM-getset
as.matrix,LinearEmbeddingMatrix-method	LEM-getset
cbind,LinearEmbeddingMatrix-method	LEM-combine
cbind,SingleCellExperiment-method	SCE-combine
clearSizeFactors	SCE-sizeFactors
clearSizeFactors,SingleCellExperiment-method	SCE-sizeFactors
clearSpikes	SCE-isSpike
clearSpikes,SingleCellExperiment-method	SCE-isSpike
coerce,RangedSummarizedExperiment,SingleCellExperiment-method	SingleCellExperiment
coerce,SummarizedExperiment,SingleCellExperiment-method	SingleCellExperiment
colData,SingleCellExperiment-method	SCE-colData
counts	SCE-assays
counts,SingleCellExperiment-method	SCE-assays
counts<-	SCE-assays
counts<-,SingleCellExperiment-method	SCE-assays
cpm	SCE-assays
cpm,SingleCellExperiment-method	SCE-assays
cpm<-	SCE-assays
cpm<-,SingleCellExperiment-method	SCE-assays
dim,LinearEmbeddingMatrix-method	LEM-getset
dimnames,LinearEmbeddingMatrix-method	LEM-getset
dimnames<-,LinearEmbeddingMatrix,ANY-method	LEM-getset
dimnames<-,LinearEmbeddingMatrix-method	LEM-getset
factorData	LEM-getset
factorData,LinearEmbeddingMatrix-method	LEM-getset
factorData<-	LEM-getset
factorData<-,LinearEmbeddingMatrix-method	LEM-getset
featureLoadings	LEM-getset
featureLoadings,LinearEmbeddingMatrix-method	LEM-getset
featureLoadings<-	LEM-getset
featureLoadings<-,LinearEmbeddingMatrix-method	LEM-getset
int_colData	SCE-internal
int_colData,SingleCellExperiment-method	SCE-internal
int_colData<-	SCE-internal
int_colData<-,SingleCellExperiment-method	SCE-internal
int_elementMetadata	SCE-internal
int_elementMetadata,SingleCellExperiment-method	SCE-internal
int_elementMetadata<-	SCE-internal
int_elementMetadata<-,SingleCellExperiment-method	SCE-internal
int_metadata	SCE-internal
int_metadata,SingleCellExperiment-method	SCE-internal
int_metadata<-	SCE-internal
int_metadata<-,SingleCellExperiment-method	SCE-internal
isSpike	SCE-isSpike
isSpike,SingleCellExperiment,character-method	SCE-isSpike
isSpike,SingleCellExperiment,missing-method	SCE-isSpike
isSpike,SingleCellExperiment,NULL-method	SCE-isSpike
isSpike<-	SCE-isSpike
isSpike<-,SingleCellExperiment,character-method	SCE-isSpike
LinearEmbeddingMatrix	LinearEmbeddingMatrix
LinearEmbeddingMatrix-class	LinearEmbeddingMatrix
logcounts	SCE-assays
logcounts,SingleCellExperiment-method	SCE-assays
logcounts<-	SCE-assays
logcounts<-,SingleCellExperiment-method	SCE-assays
normcounts	SCE-assays
normcounts,SingleCellExperiment-method	SCE-assays
normcounts<-	SCE-assays
normcounts<-,SingleCellExperiment-method	SCE-assays
objectVersion	SCE-misc
objectVersion,SingleCellExperiment-method	SCE-misc
rbind,LinearEmbeddingMatrix-method	LEM-combine
rbind,SingleCellExperiment-method	SCE-combine
reducedDim	SCE-reducedDims
reducedDim,SingleCellExperiment-method	SCE-reducedDims
reducedDim<-	SCE-reducedDims
reducedDim<-,SingleCellExperiment-method	SCE-reducedDims
reducedDimNames	SCE-reducedDims
reducedDimNames,SingleCellExperiment-method	SCE-reducedDims
reducedDimNames<-	SCE-reducedDims
reducedDimNames<-,SingleCellExperiment,character-method	SCE-reducedDims
reducedDims	SCE-reducedDims
reducedDims,SingleCellExperiment-method	SCE-reducedDims
reducedDims<-	SCE-reducedDims
reducedDims<-,SingleCellExperiment-method	SCE-reducedDims
rowData,SingleCellExperiment-method	SCE-colData
sampleFactors	LEM-getset
sampleFactors,LinearEmbeddingMatrix-method	LEM-getset
sampleFactors<-	LEM-getset
sampleFactors<-,LinearEmbeddingMatrix-method	LEM-getset
show,LinearEmbeddingMatrix-method	LEM-misc
show,SingleCellExperiment-method	SCE-misc
SingleCellExperiment	SingleCellExperiment
SingleCellExperiment-class	SingleCellExperiment
sizeFactorNames	SCE-sizeFactors
sizeFactorNames,SingleCellExperiment-method	SCE-sizeFactors
sizeFactors	SCE-sizeFactors
sizeFactors,SingleCellExperiment-method	SCE-sizeFactors
sizeFactors<-,SingleCellExperiment-method	SCE-sizeFactors
spikeNames	SCE-isSpike
spikeNames,SingleCellExperiment-method	SCE-isSpike
tpm	SCE-assays
tpm,SingleCellExperiment-method	SCE-assays
tpm<-	SCE-assays
tpm<-,SingleCellExperiment-method	SCE-assays
weights	SCE-assays
weights,SingleCellExperiment-method	SCE-assays
weights<-	SCE-assays
weights<-,SingleCellExperiment-method	SCE-assays
[,LinearEmbeddingMatrix,ANY,ANY,ANY-method	LEM-subset
[,LinearEmbeddingMatrix,ANY,ANY-method	LEM-subset
[,LinearEmbeddingMatrix,ANY-method	LEM-subset
[,SingleCellExperiment,ANY,ANY,ANY-method	SCE-subset
[,SingleCellExperiment,ANY,ANY-method	SCE-subset
[,SingleCellExperiment,ANY-method	SCE-subset
[<-,LinearEmbeddingMatrix,ANY,ANY,LinearEmbeddingMatrix-method	LEM-subset
[<-,SingleCellExperiment,ANY,ANY,SingleCellExperiment-method	SCE-subset
