plotting_cross_talk {StarBioTrek} | R Documentation

## Get human KEGG pathway data and a gene expression matrix we obtain a matrix with the gene expression for only pathways given in input .

### Description

plotting_matrix creates a matrix of gene expression for pathways given by the user.

### Usage

    plotting_cross_talk(DataMatrix, pathway, path_matrix)

### Arguments

`DataMatrix` | gene expression matrix (eg.TCGA data)
`pathway` | pathway data as provided by getKEGGdata
`path_matrix` | output of the function matrix_plot

### Value

a plot for pathway cross talk

### Examples

    mt<-plotting_cross_talk(DataMatrix=tumo[,1:2],pathway=path,path_matrix=list_path_plot)

[Package StarBioTrek version 1.8.1 Index]