Package: SummarizedBenchmark
Type: Package
Title: Classes and methods for performing benchmark comparisons
Version: 2.0.1
Author: Alejandro Reyes <alejandro.reyes.ds@gmail.com>, Patrick Kimes <patrick.kimes@gmail.com>
Maintainer: Alejandro Reyes <alejandro.reyes.ds@gmail.com>, Patrick Kimes <patrick.kimes@gmail.com>
Description: This package defines the BenchDesign and SummarizedBenchmark classes for building,
    executing, and evaluating benchmark experiments of computational methods. The SummarizedBenchmark
    class extends the RangedSummarizedExperiment object, and is designed to provide infrastructure
    to store and compare the results of applying different methods to a shared data set.
    This class provides an integrated interface to store metadata such as method parameters and software 
    versions as well as ground truths (when these are available) and evaluation metrics.
biocViews: Software, Infrastructure
Depends: R (>= 3.5), tidyr, SummarizedExperiment, S4Vectors,
        BiocGenerics, methods, UpSetR, rlang, stringr, utils,
        BiocParallel, ggplot2, mclust, dplyr, digest, sessioninfo,
        crayon, tibble
Suggests: iCOBRA, BiocStyle, knitr, magrittr, IHW, qvalue, testthat,
        DESeq2, edgeR, limma, tximport, readr, scRNAseq, splatter,
        scater, rnaseqcomp, biomaRt
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 6.1.0
git_url: https://git.bioconductor.org/packages/SummarizedBenchmark
git_branch: RELEASE_3_8
git_last_commit: 7eee513
git_last_commit_date: 2019-01-20
Date/Publication: 2019-01-20
NeedsCompilation: no
Packaged: 2019-01-21 04:58:06 UTC; biocbuild
Built: R 3.5.2; ; 2019-01-21 12:38:17 UTC; windows
