TCGAbiolinks-package	TCGAbiolinks
batch.info	batch.info
bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf	bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf
BRCA_rnaseqv2	BRCA_rnaseqv2
calculate.pvalues	calculate.pvalues
chol_maf	chol_maf
clinBRCA	clinBRCA
clinical.biotab	clinical.biotab
colDataPrepare	colDataPrepare
dataBRCA	dataBRCA
dataDEGsFiltLevel	dataDEGsFiltLevel
dataREAD	dataREAD
dataREAD_df	dataREAD_df
diffmean	diffmean
gaiaCNVplot	gaiaCNVplot
gbm.exp.harmonized	gbm.exp.harmonized
gbm.exp.legacy	gbm.exp.legacy
GDCdownload	GDCdownload
GDCprepare	GDCprepare
GDCprepare_clinic	GDCprepare_clinic
GDCquery	GDCquery
GDCquery_ATAC_seq	GDCquery_ATAC_seq
GDCquery_clinic	GDCquery_clinic
GDCquery_Maf	GDCquery_Maf
geneInfo	geneInfo
geneInfoHT	geneInfoHT
GenesCutID	GenesCutID
GeneSplitRegulon	GeneSplitRegulon
get.GRCh.bioMart	get.GRCh.bioMart
getAdjacencyBiogrid	getAdjacencyBiogrid
getDataCategorySummary	getDataCategorySummary
getGDCInfo	getGDCInfo
getGDCprojects	getGDCprojects
getGistic	getGistic
getManifest	getManifest
getResults	getResults
getSampleFilesSummary	getSampleFilesSummary
getTSS	getTSS
get_IDs	get_IDs
ggbiplot	ggbiplot
isServeOK	isServeOK
matchedMetExp	matchedMetExp
met.gbm.27k	met.gbm.27k
msi_results	msi_results
pancan2018	pancan2018
PanCancerAtlas_subtypes	PanCancerAtlas_subtypes
TabSubtypesCol_merged	TabSubtypesCol_merged
tabSurvKMcompleteDEGs	tabSurvKMcompleteDEGs
TCGAanalyze_analyseGRN	TCGAanalyze_analyseGRN
TCGAanalyze_Clustering	TCGAanalyze_Clustering
TCGAanalyze_DEA	TCGAanalyze_DEA
TCGAanalyze_DEA_Affy	TCGAanalyze_DEA_Affy
TCGAanalyze_DMR	TCGAanalyze_DMR
TCGAanalyze_EA	TCGAanalyze_EA
TCGAanalyze_EAcomplete	TCGAanalyze_EAcomplete
TCGAanalyze_Filtering	TCGAanalyze_Filtering
TCGAanalyze_LevelTab	TCGAanalyze_LevelTab
TCGAanalyze_networkInference	TCGAanalyze_networkInference
TCGAanalyze_Normalization	TCGAanalyze_Normalization
TCGAanalyze_Pathview	TCGAanalyze_Pathview
TCGAanalyze_Preprocessing	TCGAanalyze_Preprocessing
TCGAanalyze_survival	TCGAanalyze_survival
TCGAanalyze_SurvivalKM	TCGAanalyze_SurvivalKM
TCGAbatch_Correction	TCGAbatch_Correction
TCGAbiolinks	TCGAbiolinks
TCGAprepare_Affy	TCGAprepare_Affy
TCGAquery_MatchedCoupledSampleTypes	TCGAquery_MatchedCoupledSampleTypes
TCGAquery_recount2	TCGAquery_recount2
TCGAquery_SampleTypes	TCGAquery_SampleTypes
TCGAquery_subtype	TCGAquery_subtype
TCGAtumor_purity	TCGAtumor_purity
TCGAvisualize_BarPlot	TCGAvisualize_BarPlot
TCGAvisualize_EAbarplot	TCGAvisualize_EAbarplot
TCGAvisualize_Heatmap	TCGAvisualize_Heatmap
TCGAvisualize_meanMethylation	TCGAvisualize_meanMethylation
TCGAvisualize_oncoprint	TCGAvisualize_oncoprint
TCGAvisualize_PCA	TCGAvisualize_PCA
TCGAvisualize_starburst	TCGAvisualize_starburst
TCGAvisualize_SurvivalCoxNET	TCGAvisualize_SurvivalCoxNET
TCGAVisualize_volcano	TCGAVisualize_volcano
TCGA_MolecularSubtype	TCGA_MolecularSubtype
Tumor.purity	Tumor.purity
UseRaw_afterFilter	UseRaw_afterFilter
