plot_accumulation {TFHAZ} | R Documentation

## Plots the accumulation vector obtained with the accumulation function.

### Description

For each chromosome base (x axis), this function plots the value of accumulation (y axis) calculated with the accumulation function. The plot is saved in a ".png" file. If the accumulation input was found with chr = "all", the chromosomes (one or more) to be considered can be chosen.

### Usage

    plot_accumulation(accumulation, chr = NULL)

### Arguments

`accumulation` | a list of four elements, as the output of the accumulation function, containing: a sparse vector with accumulation values, the accumulation type, a chromosome name, and the half-width of the window used for the accumulation count.
`chr` | optional argument, needed if the accumulation input was found with chr = "all"; a string or a vector containing strings with the name of the chromosome(s) (e.g., "chr1" or c("chr1", "chr4")) to be considered.

### Value

None, the function is invoked for its side effect.

### Examples

    # loading dataset
    data("data_man")
    # TF_acc_w_0 is in the data_man collection of datasets
    # plot accumulation vector
    plot_accumulation(TF_acc_w_0)

[Package TFHAZ version 1.4.0 Index]