plot_n_zones {TFHAZ} | R Documentation

## Plots the number of dense zones for each threshold value.

### Description

For each accumulation threshold value considered, this function shows the number of dense zones found (e.g., with the dense_zones function). It also plots in red color the point of the graph with maximum slope change (maximum second derivative).

### Usage

    plot_n_zones(zones, chr = NULL)

### Arguments

`zones` | a list of eight elements, as the output of the dense_zones function.
`chr` | optional argument, needed if the input was found with chr = "all"; a string or a vector containing strings with the name of the chromosome(s) (e.g., "chr1" or c("chr1", "chr4")) to be considered

### Value

None, the function is invoked for its side effect.

### Examples

    # loading data
    data("data_man")
    # TF_dense_w_0 is in the data_man collection of datasets
    # plot number of zones
    plot_n_zones(TF_dense_w_0)

[Package TFHAZ version 1.4.0 Index]