tppccrNormalize {TPP} | R Documentation

## Normalize data from TPP-CCR experiments

### Description

Normalize each fold change column by its median.

### Usage

    tppccrNormalize(data)

### Arguments

`data` | list of expressionSets with measurements to be normalized

### Value

List of expressionSet objects storing the normalized fold changes, as well as row and column metadata. In each expressionSet `S`, the fold changes can be accessed by `Biobase::exprs(S)`. Protein names can be accessed by `featureNames(S)`. Isobaric labels and the corresponding concentrations are returned by `S$label` and `S$concentration`.

### Examples

    data(hdacCCR_smallExample)
    tppccrData <- tppccrImport(configTable=hdacCCR_config, data = hdacCCR_data)
    tppccrNorm <- tppccrNormalize(data=tppccrData)
    head(Biobase::exprs(tppccrNorm[[1]]))

[Package TPP version 3.10.1 Index]