7ac99cf47a6779832b1ba4d7344a8c09 *DESCRIPTION
a59a213d1e3e164edeb7ed0a4a93b5ae *INDEX
ec7c8f3beaa109cbf2785d6d0ce9bf00 *Meta/Rd.rds
31189a81677c73a5aba945fbd881f8b4 *Meta/data.rds
77a30dbd9a48297ae6e6ef2194a95267 *Meta/features.rds
4ae4925b8751e361c5b5bb9abb19cfb4 *Meta/hsearch.rds
4a6b341d2f6fcde7f818846b180c6713 *Meta/links.rds
d56a766b5d5a4d614adeace1df8821f0 *Meta/nsInfo.rds
c71915c976b62a4f951824ecf8e3e8b6 *Meta/package.rds
780954bca0331ef827b74a3ce7206fb1 *Meta/vignette.rds
69a7d0e63cabca95a963b41c60d0a137 *NAMESPACE
12e0d89a39609275556a4268d20d1050 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/TPP
e761fd6350ef5ef87f90c0b3a62fb0cb *R/TPP.rdb
199d0ebc82d53735796d43e85e8360e1 *R/TPP.rdx
8f9f2358409273ebc5c5d4ac78edbcc8 *data/TPPTR_reference_results_HepG2.RData
ae998c0fe9447fbe1ff3b833a9506bba *data/datalist
3b2e7f58a451bafc144053e0cf4a7083 *data/hdacCCR_smallExample.RData
f8b1baab71c2edb5c204a0d2da38f7d5 *data/hdacTR_resultsTable_smallExample.RData
b3013f12ee19b16668f58c7d5f875928 *data/hdacTR_smallExample.RData
dc278f421f5ae48596b6f289e32a2901 *data/panobinostat_2DTPP_smallExample.RData
66f365de720c114e2ed9b35be7349cbb *doc/NPARC_analysis_of_TPP_TR_data.R
62bbc77d95d3cf73eada92851ac938ff *doc/NPARC_analysis_of_TPP_TR_data.Rnw
47dcfa53f59d01d0fd3043970fa7c031 *doc/NPARC_analysis_of_TPP_TR_data.pdf
5800456e28579707a6f2ace29dbfb448 *doc/TPP_introduction_1D.R
b10011dcfcc5e495cc1cc26fae4b4b47 *doc/TPP_introduction_1D.Rnw
76310cca10574d4b800a6a3c0c4008c3 *doc/TPP_introduction_1D.pdf
5ae2c601f5050be8d374ac49c736e8e1 *doc/TPP_introduction_2D.R
8af46408a19aab45c41fd305b1467171 *doc/TPP_introduction_2D.Rnw
945983be95938f9b2a79aa3664361f64 *doc/TPP_introduction_2D.pdf
3f4d5be39f160cc692fb594ac071478c *doc/index.html
47d6dcf6728d567fa8dff94846cf7146 *example_data/2D_example_data/PFC_39093_PF1_QV1_P0101918C.txt
49936bd44f6f198204a1a969082d9a56 *example_data/2D_example_data/PFC_39099_PF1_QV1_P0101908C.txt
36404d1fb410c4c8fd29d7cd73180527 *example_data/2D_example_data/PFC_39101_PF1_QV1_P0101898C.txt
bd6aa3e7c9e0e1b15883f40e4ac9ca2b *example_data/2D_example_data/PFC_39106_PF1_QV1_P0101868C.txt
72a3931b1e3fe02ba254fb369357e571 *example_data/2D_example_data/PFC_39108_PF1_QV1_P0101878C.txt
b18d4d236187e0d929cc837585bcca94 *example_data/2D_example_data/PFC_39110_PF1_QV1_P0101888C.txt
69ae5a1fbc257b00456c2d9dbd5d6768 *example_data/2D_example_data/Panobinostat_TPP-2D_config.xlsx
c4df4f396442f81fd1987e0ab9a85fc7 *example_data/2D_example_data/fractAbundInData.RData
b9f231613961d258afe24bcc7472c54b *example_data/2D_example_data/referenceNormData.RData
7ac1093552eaf281576d5f20e605e5d6 *example_data/2D_example_data/shortCCRresults.RData
bdaf865b9856729c2084de6081e72521 *example_data/2D_example_data/shortData2d.RData
f4d14590fe21a76f30fa18c3e5889ee7 *example_data/CCR_example_data/Panobinostat_TPP-CCR_config.xlsx
5e0f32079fbfa4b4e7ffcb5aec39c4e4 *example_data/CCR_example_data/panobinostat_1_merged_results_20150227_1017_proteins.txt
d41ccfe4fb92d18ac9daeecc1db7bf19 *example_data/CCR_example_data/panobinostat_2_merged_results_20150227_1110_proteins.txt
9354d118e09492f93f7b8bc8d1ca861d *example_data/TR_example_data/Panobinostat_TPP-TR_config.xlsx
0c67cbada22f6f71a009961f3e5b4358 *example_data/TR_example_data/panobinostat_1_merged_results_20150226_1013_proteins.txt
16b1e70d2e5c17c3bd55f0c9604a0683 *example_data/TR_example_data/panobinostat_2_merged_results_20150226_1139_proteins.txt
b829591e84c8a081a4d4ccb6b6862b7a *example_data/TR_example_data/vehicle_1_merged_results_20150227_0908_proteins.txt
fb36f922b446d48f649597a371ebdd62 *example_data/TR_example_data/vehicle_2_merged_results_20150227_0847_proteins.txt
1256b0a8d12397ba0a6e1ba06829eef6 *extdata/randomESet.Rdata
e5dfe3c3cf805dab702697c1d69a5acf *extdata/validationData_meltCurveFilter.Rdata
ac65d119549f18e6a29ef490492f7833 *extdata/validationData_pvalBinning.Rdata
5780f9c0ddd0e6bd267e6d7bc4a02c34 *extdata/validationData_pvalComputation.Rdata
cd73bfaf387450d7a0a635936d19c438 *help/AnIndex
ccaaf117f6f6dccdf18c2e91d474aea8 *help/TPP.rdb
3410bf716d71f7a076a6bbaef39226c8 *help/TPP.rdx
12060eae4c4f960fe515bebd50dde139 *help/aliases.rds
662055141e2fe33f9abd9422e2a36594 *help/paths.rds
eda2761ecfdd05511a6ecf778c2a7ef5 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7512c280f7bb02e0a2dee80045d25a09 *html/TPP-deprecated.html
4c339ff3cbbf625f64d7db2cdefb4050 *html/TPP.html
2bf808173a57b24c9300233d804dccf4 *html/TPPTR_reference_results_HepG2.html
9a3239aa81580aa258802a43b97238b8 *html/analyze2DTPP.html
c347c41a8c7f22f8cf584059eb0107e7 *html/analyzeTPPCCR.html
46dac9e4f2430970a43ea3fa81319ddb *html/analyzeTPPTR.html
8c177e4e0c8788c42eee693cd14789cb *html/hdacCCR_config.html
f22ce37595f5a1edb3a4d36bdfd975d7 *html/hdacCCR_data.html
a0a9c66668d84b071365ee7ab14ba90e *html/hdacCCR_smallExample.html
51e10b30f8e1465d37ffb240a01febf4 *html/hdacTR_config.html
5941aea409d182147a3c1e9d241476b6 *html/hdacTR_data.html
bea5ee4f78fd1ec2b2f56feea1060b10 *html/hdacTR_resultsTable_smallExample.html
1433ab30b038fec2d9c2e65157d5ca10 *html/hdacTR_smallExample.html
9f77cbd9b92648e354fdc0109098c1cd *html/panobinostat_2DTPP_config.html
8ce0ac14a2eb7dfdd56a31bd2798f6ea *html/panobinostat_2DTPP_data.html
7b123c9a87bc61534f5d932a13010671 *html/panobinostat_2DTPP_smallExample.html
adeabcbbf02cb244a735e96987f9f86e *html/resultTable.html
7d9fa7effc561e63be247a876cf82b6e *html/tpp2dAddAdditionalInfo.html
e342ea7be3bdc6a9ff9787048b68df39 *html/tpp2dCalcFractAbundance.html
d8eaee531557e43ce180a89131b14e8d *html/tpp2dComputeFoldChanges.html
77773bdcea24e790cd888f6ce6ca007b *html/tpp2dCreateDRplots.html
c0b5bfee4657d561429d5cd6cc04c383 *html/tpp2dCreateReport.html
87b463618b4bfa324b487b3651546c08 *html/tpp2dCreateTPPTRreference.html
2fff1af79a035c1ec41b83c15114fbcf *html/tpp2dCurveFit.html
a8b3c08cbe7dd9b5d2b8ee8c187305a7 *html/tpp2dExport.html
e046599f93139d23772d0e0ba7ae1d55 *html/tpp2dExportPlots.html
2e491b9d52c5b487bdf66aa33f0011c3 *html/tpp2dImport.html
d2f3649f81aada3a689d7a2e789ba46d *html/tpp2dMerge2dRef.html
c587c65ae458901d2a4659f192dfecb5 *html/tpp2dNormalize.html
dec8a2a2e52935874c4f32627c8e4950 *html/tpp2dPlotQChist.html
13efc5748931f93db34930212240c0b0 *html/tpp2dPlotQCpEC50.html
87200cda212e721c5323b2bf84915fe1 *html/tpp2dSplineFitAndTest.html
a262a6d572edcb4bd7a2dfa0b10af086 *html/tpp2dSplinePlot.html
07a4e08f89a4cfb631468d2dd608cccc *html/tpp2dTRReferenceObject.html
8bbf5108784fa5618a93146097da261f *html/tppDefaultTheme.html
3d6779955b10167cb708c225ce4ac43d *html/tppExport.html
39d9f4cb0386eb9e47e7167696348cd8 *html/tppQCPlotsCorrelateExperiments.html
70a120037ffc64d345d150d47aa5b1f6 *html/tppRefData.html
63e1b829d86275fea46dfbddb89c2b28 *html/tppccrCurveFit.html
8f4b0ee8450e537eb0d58f57e7ff8c66 *html/tppccrImport.html
1d8dc55d6d4f97b77e1afb6c7febe395 *html/tppccrNormalize.html
10cd84e7f846708037eb060198ac6f0c *html/tppccrNormalizeToReference.html
75c0b71be88b1c74e5fd5b1175618ad6 *html/tppccrPlotCurves.html
2858f292fd32b0fa7673b9346829eb32 *html/tppccrResultTable.html
a0dc72b12d17773ebcebeca524e15021 *html/tppccrTransform.html
9b0e6d85ad54023f9eb0842353db5830 *html/tpptrAnalyzeMeltingCurves.html
4ea28f04f1f02b624054cbed89a7a662 *html/tpptrCurveFit.html
0fbf3b4815173514190f1c6d5e1a5fc4 *html/tpptrDefaultNormReqs.html
1c2f342a7c93b1e958e8a3dde9c2dd96 *html/tpptrFTest.html
5134298d5a8a098191ae1911fc63f39f *html/tpptrFitSplines.html
6c15655719a91d97a7140f8345544ea1 *html/tpptrImport.html
50103921359776fad63e69e57072b960 *html/tpptrNormalize.html
d9494a20d5658132bf82628c0046cfb2 *html/tpptrPlotSplines.html
c10087c63d506ac4d034e8e94306fb9e *html/tpptrSplineFitAndTest.html
90a576bd93826496d6a55e80a56a3233 *html/tpptrTidyUpESets.html
34cf6463786c086fbdc26258775f4226 *test_data/Panobinostat_2DTPP_smallExample.R
dc278f421f5ae48596b6f289e32a2901 *test_data/panobinostat_2DTPP_smallExample.RData
32427e8533075fe7a32b238cbe30c6a6 *test_data/panobinostat_2D_fcResults.rds
21d5b630e163b043c02b60c3f5d2ad15 *test_data/panobinostat_2D_fcResults2.rds
b3d7fd094076872739b8d107d295fdc7 *test_data/panobinostat_2D_fitResults.rds
bbcb9c667cff575d2fe212aeca32809e *test_data/panobinostat_2D_fitResults2.rds
5c5e358c5fb3558f39dd004465c0f744 *test_data/panobinostat_2D_fitResults3.rds
020b7cb8b6fcdd5d66709139d2f962e4 *test_data/panobinostat_2D_importResults.rds
9e1a158df9cc2f917c293587c7369acc *test_data/panobinostat_2D_importResults2.rds
c9549a07a02d3bb7c7948ebb9a87ee64 *test_data/panobinostat_2D_normResults.rds
f43fe33c95beca4e8dd409cc38c60a02 *test_data/panobinostat_2D_normResults2.rds
3a4bc9d77bd53291f50b26d9e68df87a *test_data/panobinostat_2D_normResults3.rds
c9c7d328ba3df010cd076da9ecdb4419 *test_data/panobinostat_CCR_fitResults.rds
04b312febb661cf7e9f3ba6f022f618f *test_data/panobinostat_ex_confg.txt
77926387b04492a51eebe58ce3ae78f2 *test_data/panobinostat_ex_confg2.txt
a131fcceb128328668c30dd31027c05d *tpp2d_report.Rmd
