add_custom_vcf_to_database {Uniquorn} | R Documentation

## add_custom_vcf_to_database This function adds the variants of parsed custom CCLs to a monet DB instance

### Description

add_custom_vcf_to_database This function adds the variants of parsed custom CCLs to a monet DB instance

### Usage

    add_custom_vcf_to_database(
        vcf_input_files,
        ref_gen = "GRCH37",
        library_name = "CUSTOM",
        n_threads = 1,
        test_mode = FALSE
    )

### Arguments

`vcf_input_files` | a character vector containing the input vcf files. This may be one or many vcf files.
`ref_gen` | a character string specifying the reference genome version. All training sets are associated with a reference genome version. Default is `"GRCH37"`.
`library_name` | a character string giving the name of the library to add the cancer cell lines to. Default is `"CUSTOM"`. Library name will be automatically added as a suffix to the identifier.
`n_threads` | an integer specifying the number of threads to be used.
`test_mode` | Is this a test? Just for internal use

### Value

Message wheather the adding was successful

### Examples

    HT29_vcf_file = system.file("extdata/HT29_TEST.vcf", package = "Uniquorn");
    add_custom_vcf_to_database(
        vcf_input_files = HT29_vcf_file,
        library_name = "CELLMINER",
        ref_gen = "GRCH37",
        n_threads = 1,
        test_mode = TRUE
    )

[Package Uniquorn version 2.2.1 Index]