remove_ccls_from_database {Uniquorn} | R Documentation

## Remove Cancer Cell Line

### Description

This function removes a cancer cell line training fingerprint (VCF file) from the database. The names of all training sets can be seen by using the function `show_contained_cls`.

### Usage

    remove_ccls_from_database(ccl_names, ref_gen = "GRCH37",
        library_name, test_mode = FALSE)

### Arguments

`ccl_names` | A character vector giving the names of the cancer cell line identifiers to be removed. Can be one or many
`ref_gen` | A character vector specifying the reference genome version. All training sets are associated with a reference genome version. Default is `"GRCH37"`.
`library_name` | Name of the library from which ccls are to be removed
`test_mode` | Signifies if this is a test run

### Value

Message that indicates whether the removal was succesful.

### Examples

    remove_ccls_from_database(
        ccl_names = "HT29",
        ref_gen = "GRCH37",
        library_name = "CELLMINER",
        test_mode = TRUE
    )

[Package Uniquorn version 2.2.1 Index]