show_contained_variants_in_library {Uniquorn} | R Documentation

## All variants contained in reference library

### Description

This function shows all variants contained in a reference library for a given inclusion weight. Default inclusion weight is 0 (all variants).

### Usage

    show_contained_variants_in_library(
        ref_gen,
        library_name,
        mutational_weight_inclusion_threshold
    )

### Arguments

`ref_gen` | a character vector specifying the reference genome version. All training sets are associated with a reference genome version. Default is `"GRCH37"`.
`library_name` | Name of the reference library.
`mutational_weight_inclusion_threshold` | Include only mutations with a weight of at least x. Range: 0.0 to 1.0. 1 = unique to CL. ~0 = found in many CL samples.

### Value

Returns a GenomicRanges object that contains the variants

### Examples

    ## Show all variants contained in reference library CELLMINER
    show_contained_variants_in_library(
        ref_gen = "GRCH37",
        library_name = "CELLMINER",
        mutational_weight_inclusion_threshold = 0
    )

[Package Uniquorn version 2.2.1 Index]