create_bed_file {Uniquorn} | R Documentation

## create_bed_file

### Description

Creates BED files from the found and not found annotated mutations

### Usage

    create_bed_file(
    match_t,
    vcf_fingerprint,
    output_file,
    ref_gen,
    manual_identifier

    )

### Arguments

`match_t` | R table which contains the mutations from the training database for the cancer cell lines
`vcf_fingerprint` | contains the mutations that are present in the query cancer cell line's vcf file
`output_file` | Path to output file
`ref_gen` | Reference genome version
`manual_identifier` | Manually enter a vector of CL name(s) whose bed files should be created, independently from them passing the detection threshold

### Value

Returns a message which indicates if the BED file creation has succeeded

[Package Uniquorn version 2.2.1 Index]