61c3be5de34beed0729495feee49ff85 *CITATION
2e348e2161e5a4956434953b1af9d633 *DESCRIPTION
5d6410f83386a0604d6753115e870e70 *INDEX
6f66a870aa032c15660d509174a96134 *Meta/Rd.rds
91657d6785d17f4d6f33e9952cad6a7d *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
b09d87a7b3b4796856eb482a3020b417 *Meta/hsearch.rds
d3276fdd65e0b497fce2ec69e28da3a2 *Meta/links.rds
c1e54066f79fd7873ede113abe017dd7 *Meta/nsInfo.rds
97d56236f637274d47e65311eb45fa5e *Meta/package.rds
3bac761e1e41e8cd4a487df973fbe7fc *Meta/vignette.rds
b4cbf4d05af32865b1b62845926a278a *NAMESPACE
0c397c9b1e2cb7558093a8c517f6ad5f *NEWS
1d030c607d59b662b1ab957dbd61b707 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/VanillaICE
29733db4704777852f12fa4336a2f668 *R/VanillaICE.rdb
86803d4136377e355d3b54f830a08649 *R/VanillaICE.rdx
04460dd82132b47636ab633fe6b4d54a *data/snp_exp.rda
2848c45d81d8d476f90835c868b69b2b *doc/VanillaICE.R
56c61f4e95d8ee333f3fde27d99901ad *doc/VanillaICE.Rnw
984983f6663659b9814f47d03239919d *doc/VanillaICE.pdf
c3c2d5fe599901eca8752b382d4b3c76 *doc/crlmmDownstream.R
ea0b1a6285918fc42e4f480684c7269a *doc/crlmmDownstream.Rnw
dc03492044e41a2d9e35a3b440288082 *doc/crlmmDownstream.pdf
b7390e10af4851bee25fc3539802939e *doc/index.html
0447715fdae0a7d16252fb6ed285ecdd *extdata/FinalReport1664.txt
ced1278febff90110128fe422751bab6 *extdata/FinalReport1675.txt
c70d39336189b7781e5e2f55e23b2642 *extdata/FinalReport1686.txt
bf543d199b10c1dc65ff789680cf5c0d *extdata/FinalReport6841.txt
8b479ef7ca10064b3ef70b840b21d11f *extdata/FinalReport6872.txt
c91acc99db7195be410bcf152b98cf45 *extdata/FinalReport6903.txt
150393f25d768b854316ed30add44767 *extdata/SNP_info.csv
2c1d13e3e83f38aaab3f327961441fc1 *extdata/sample_data.csv
3bd62c5cbb3d924a560070ad6619a328 *extdata/snp_exp.rda
44f96f4d827c643b6387319aa529b284 *help/AnIndex
26d95ec07a90e6f15a80862990831706 *help/VanillaICE.rdb
0d28ac93de141a3457abb04920e94cc3 *help/VanillaICE.rdx
89193b556ba053aa809ab3a837323214 *help/aliases.rds
f8bff448e44863597cf67154b18a8c39 *help/paths.rds
489325c74244e2bf94820cb78e79f91c *html/00Index.html
9cc6bc4ef318aa2323a1901dde63f908 *html/ArrayViews-class.html
5c5180d224d070234cfb7481987e1de3 *html/CopyNumScanParams.html
d2ffceb31945d5c1fc5737f1f60e9e4a *html/EmissionParam-methods.html
9c6d11f2a6d10d011a179d53328020cd *html/FilterParam-class.html
2d0987056a07678ee98996446908c0d3 *html/HMM.html
8c992c9da0a05f4f831ece17335e72b5 *html/HMMList-class.html
5a42c78e6bd907902a742c8491b53b46 *html/HMMList.html
c046c1e587308349883282be1d6c53b8 *html/HmmGRanges-methods.html
7c8f5e9afb3353b1d527074592eb86bc *html/HmmParam.html
65ffd861d6d078218a5a0e8a1094ed5c *html/HmmTrellisParam.html
48d73d2be1e713d06f60ffc9ca183c0f *html/IO.html
5c25a8d1f163b603d025db1f0ed1ffa1 *html/IdiogramParam-class.html
18692e9b59712956b2443108c003da0d *html/IdiogramParams-class.html
db7c0b204bb085a21d8f4262d06b6d43 *html/LogLik-class.html
2d75aa1c5c3f2faec90557a984f1ca8a *html/LogLik.html
0b12e628cbe937e5cc646860c73065cc *html/LowLevelSummaries.html
f201bcd6e3bd4b81650c689f6299c0fc *html/NA_filter.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f5d59749c7c80829ce472ca9e5893d84 *html/SnpArrayExperiment-class.html
6d05d3e7e0c50e52af9cec65a4433035 *html/SnpExperiment.html
564dfc5a04d9b4f38abea31893f63252 *html/SnpGRanges.html
bfdfb851e142b9296d44ea81c2029d77 *html/TransitionParam.html
edcff8bdc7277b0fd3438e58bf908023 *html/VanillaICE.html
efdeee29dabd15a856abe00c6ff2cd14 *html/Viterbi-methods.html
284a6ca004a1b6f325469bcb00156e8a *html/acf2.html
33a301455b0eca98912a3073dd57acb8 *html/baumWelchUpdate.html
6b1484b408fefa6f686d053170baa522 *html/calculateEmission.html
180bbd5b2c887aaf490c8cd9a3bbb786 *html/cnvFilter.html
296924dc29051f5b520c4166682d8507 *html/doUpdate.html
4cef520f85f38516a081963aa9b234cc *html/dropDuplicatedMapLocs.html
c316e4a47ea2da6892b74236dc580541 *html/dropSexChrom.html
047ee14ff33b4b6fb14e7028b523c4c3 *html/emission.html
d0f34abab29aace38b81eb640dadff6f *html/emissionParam.html
83a2810337f3520f7a8e8bb8095bef5a *html/filters.html
a1250f6ac11076f48fbe5501511e0499 *html/getExampleSnpExperiment.html
3e27c41f3a3370007b823911adfeb9fb *html/getHmmParams.html
262eefc1f657c81183418bf1c5e259a6 *html/hmm2.html
4c1d6e1ee5f0f974e900049fe65be256 *html/hmmResults.html
617a7bf82d5da1a7d3bb7f78188d0f0c *html/isHeterozygous.html
ad17e6715aa69da9592353a2fdaa4e37 *html/matrixOrNULL-class.html
80a8bcad051f1068978fa34b692b702b *html/numberFeatures.html
07ce8cccf562d41bbdc1e69d61f6cb07 *html/parseSourceFile.html
81fee2162f0d16e46fe7ca22d7bfbb8f *html/parsedPath.html
c65d92f858cc9693c6f64b4f80e04f8d *html/plotting.html
a7db9c8f0e441036a4853844f7aa56fc *html/probability.html
cba1d64556186efbbec5241ea75f6c51 *html/rescale.html
b4027da3a66c5500b3cca3965d15511b *html/robust-statistics.html
5ba9532ca8458f5187f3caff716974ce *html/segs.html
3428b12acb6f898e0e655581940cd33e *html/snpArrayAssays.html
0d03e999d3e30c41adaf7029a2b06c7c *html/snp_exp.html
d8cb0d31e9ae39296796b7a5bf0fcb1c *html/sourcePaths.html
e9c3e6c246ad97ad668594c18152470c *html/start-oligoSnpSet-method.html
e9dc89032dba8c97b7ef7752c2595fc5 *html/state-methods.html
7acef692ff126bbd6be65bcf663e531c *html/sweepMode.html
8a5524e72aa81af29d9d6ff6339dbb18 *html/threshold.html
80c212a9b253d7ef382a950474c2e124 *html/updateHmmParams.html
d6013cbe800f9562e175b848be83666e *html/viewports.html
f6f762aa6c6fabd917216d7a503d4550 *illumina/illuminaEx.txt
adea3a1cae1ec8c2635c5a446a936564 *libs/i386/VanillaICE.dll
2615ccdb95ab459da25e771e672d2edd *libs/x64/VanillaICE.dll
9e886f1f9a9dcf7509ec18e836d1b59a *scripts/crlmmDownstream.Rnw
d7e3c6ba592853e822693652ea3c8ced *scripts/crlmmDownstream.pdf
08188c07d38d599e7215712c7c13ad68 *scripts/runcrlmm.R
4a6ea40db9cc44323ef7a2ebcbdaf53f *test/crlmmDownstream.Rnw
3dfb5c4b35c24eb9aa6c627c8a058b7d *unitTests/Makefile
a599bbb548632444ee2137ee39c8274d *unitTests/TestData.R
6dde5b1f827ffa256bc7da02c2d1ca0f *unitTests/test_ArrayViews.R
68b329da9893e34099c7d8ad5cb9c940 *unitTests/test_BeadStudioSet.R
9a254b977ebdcd94f28e4cf3fba91d67 *unitTests/test_FilterParam.R
5bd913e28e19365bbdeeff677ba68ba9 *unitTests/test_HmmGRanges.R
dfffb5205948e7bfb40893f32564b2bb *unitTests/test_HmmParam.R
6e718d7b0e2a4e666a20b7030622acad *unitTests/test_SnpArrayExperiment.R
f4412bbcbbc2cfd4d7843061155c9068 *unitTests/test_SnpGRanges.R
f30b0479f41be30c2b3c918dd57ceb07 *unitTests/test_SummarizedExperiment.R
8ce073cabee54c4fa14542791b601d75 *unitTests/test_acf2.R
e0a5cfd2891210c3d4e8c00a6a916451 *unitTests/test_constraints.R
e7ec704ca20f3f5dfe3650b9885225a3 *unitTests/test_hmm.R
3d369fb3b23ca497b814b2d546a0bfd3 *unitTests/test_loess.R
b972a8334149d38332bad590e6a4966f *unitTests/test_oligoSetList.R
277c2a283746443fa8a7a7f63bae1363 *unitTests/test_rowMAD.R
21fe3065be0dcdd0f16f91fa4ec14c30 *unitTests/test_scaleBy.R
087b3164cf146dcdd6eed2bf4578100f *unitTests/test_sweepMode.R
7028ce08cb57dab82fb7b3bac34c7292 *unitTests/test_viterbi.R
