VRangesList-class {VariantAnnotation} | R Documentation

## VRangesList objects

### Description

VRangesList is a virtual class representing a list of `VRanges` objects and should behave much like any other derivative of `List`. It has both a simple and compressed implementation. VRangesList provides conveniences for manipulating sets of `VRanges` objects.

### Constructor

  `VRangesList(...)`: Creates a VRangesList object from `VRanges` objects in ....

### Accessors

  `alt(x)`: Returns a CharacterList or RleList, effectively by calling `alt(x[[i]])` on each element of `x`.

  `ref(x)`: Returns a CharacterList, effectively by calling `ref(x[[i]])` on each element of `x`.

### Utilities

  `stackSamples(x)`: Concentrates the elements in `x`, using `names(x)` to appropriately fill `sampleNames` in the result.

### Author(s)

Michael Lawrence

### Examples

    ## construction
    example(VRanges)
    vrl <- VRangesList(sampleA = vr, sampleB = vr)
    stackSamples(vrl)

[Package VariantAnnotation version 1.28.13 Index]