compareCoverages {ampliQueso} | R Documentation

## compareCoverages - camel measure for a single comparison.

### Description

Comparing coverage profiles with the camel measures for the two groups of BAM files, for a given genomic region.

### Usage

    compareCoverages(ch, st, en, group, t1, t2, measure="DA", covdesc="covdesc")

### Arguments

`ch` | Chromosome of the region of interest
`st` | Start of the region of interest
`en` | End of the region of interest
`group` | Name of the attribute/group in the experimental description (i.e. covdesc)
`t1` | First name of the attribute used for grouping
`t2` | Another name of the attribute used for grouping
`measure` | Method of comparison for the coverages in the selected genomic region
`covdesc` | Covdesc-like data frame - BAM files are read from row names

### Value

A single camel value with the results of comparison.

### Author(s)

Alicja Szabelska, Marek Wiewiorka, Michal Okoniewski

[Package ampliQueso version 1.20.0 Index]