lookupAlignment {amplican} | R Documentation

## Show alignment in human readable format.

### Description

Prints alignments in blast-like style for human examination.

### Usage

    lookupAlignment(x, ID, read_id = 1)

### Arguments

`x` | (AlignmentsExperimentSet)
`ID` | (string) Experiment Identifier
`read_id` | (numeric) Read Identifier. Reads are sorted by frequency. Defaults to 1, most abundant read.

### Value

(print to view)

### Examples

    # load example object
    file_path <- system.file("extdata", "results", "alignments",
                             "AlignmentsExperimentSet.rds", package = "amplican")
    aln <- readRDS(file_path)
    # look at most frequent reads aligned from experiment ID_1
    lookupAlignment(aln, "ID_1")

[Package amplican version 1.4.1 Index]