normalization {anamiR} | R Documentation

## Normalize expression data

### Description

This function will normalize the given expression data and return it in the same data format.

### Usage

    normalization(data, method = c("quantile", "normal", "rank.invariant"))

### Arguments

`data` | expression data in matrix format, with sample name in columns and gene symbol or miRNA name in rows.
`method` | normalization methods, including "quantile", "normal", "rank.invariant". Default is "quantile". As for method "normal", we trim the extreme value and calculate the mean in the data.

### Value

SummarizedExperiment for return object.

### See Also

`normalizeQuantiles` for quantile normalization; `rankinvariant` for rank invariant normalization.

### Examples

    ## Use the internal dataset
    data("mirna", package = "anamiR", envir = environment())

    ## Normalize miRNA expression data
    normalization(data = mirna, method = "quantile")

[Package anamiR version 1.10.0 Index]