iexpr {ballgown} | R Documentation

## extract transcript-level expression measurements from ballgown objects

### Description

extract transcript-level expression measurements from ballgown objects

### Usage

    iexpr(x, meas = "rcount")

    ## S4 method for signature 'ballgown'
    iexpr(x, meas = "rcount")

### Arguments

`x` | a ballgown object
`meas` | type of measurement to extract. Can be "rcount", "ucount", "mrcount", or "all". Default "rcount".

### Value

intron-by-sample matrix containing the number of reads (measured as specified by `meas`) supporting each intron, in each sample. If `meas` is `"all"`, a data frame is returned, containing all measurements and location information.

### Examples

    data(bg)
    intron_rcount_matrix = iexpr(bg)
    intron_data_frame = iexpr(bg, 'all')

[Package ballgown version 2.14.1 Index]