eexpr {ballgown} | R Documentation

## extract exon-level expression measurements from ballgown objects

### Description

extract exon-level expression measurements from ballgown objects

### Usage

    eexpr(x, meas = "rcount")

    ## S4 method for signature 'ballgown'
    eexpr(x, meas = "rcount")

### Arguments

`x` | a ballgown object
`meas` | type of measurement to extract. Can be "rcount", "ucount", "mrcount", "cov", "mcov", or "all". Default "rcount".

### Value

exon-by-sample matrix containing exon-level expression values (measured by `meas`). If `meas` is `"all"`, or `x@RSEM` is TRUE, a data frame is returned, containing all measurements and location information.

### Examples

    data(bg)
    exon_rcount_matrix = eexpr(bg)
    exon_ucount_matrix = eexpr(bg, 'ucount')
    exon_data_frame = eexpr(bg, 'all')

[Package ballgown version 2.14.1 Index]