indexlengths {basecallQC} | R Documentation

## Index lengths

### Description

Index lengths as defined by runParameters.xml

### Usage

    ## S4 method for signature 'BCL2FastQparams'
    indexlengths(object)

    ## S4 method for signature 'BCL2FastQparams'
    indexlengths(object = "BCL2FastQparams")

### Arguments

`object` | A BCL2FastQparams object

### Value

Index lengths as defined runParameters.xml.

### Author(s)

Thomas Carroll

### Examples

    fileLocations <- system.file("extdata",package="basecallQC")
    runXML <- dir(fileLocations,pattern="runParameters.xml",full.names=TRUE)
    config <- dir(fileLocations,pattern="config.ini",full.names=TRUE)
    bcl2fastqparams <- BCL2FastQparams(runXML,config,runDir=getwd(),verbose=FALSE)
    indexlength <- indexlengths(bcl2fastqparams)

[Package basecallQC version 1.6.0 Index]