getListProfData {bioCancer} | R Documentation

## get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...)

### Description

get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...)

### Usage

    getListProfData(panel, geneListLabel)

### Arguments

`panel` | Panel name (string) in which Studies are selected. There are two panels ("Circomics" or "Networking")
`geneListLabel` | The label of GeneList. There are three cases: "Genes" user gene list, "Reactome_GeneList" GeneList plus genes from reactomeFI "file name" from Examples

### Value

A LIST of profiles data (CNA, mRNA, Methylation, Mutation, miRNA, RPPA). Each dimension content a list of studies.

### Examples

    cgds <- CGDS("http://www.cbioportal.org/")
     ## Not run:
    geneList <- whichGeneList("73")
    r_data <- new.env()
    MutData <- cgdsr::getMutationData(cgds,"gbm_tcga_pub_all",
     "gbm_tcga_pub_mutations", geneList )
    FreqMut <- getFreqMutData(list(ls1=MutData, ls2=MutData), "73")
    input <- NULL
    input[['StudiesIDCircos']] <- c("luad_tcga_pub","blca_tcga_pub")

    ListProfData <- getListProfData(panel= "Circomics","73")

    ## End(Not run)

[Package bioCancer version 1.10.11 Index]