downloadL1000data {cTRAP} | R Documentation

## Download L1000 data

### Description

The data will be downloaded if not available

### Usage

    downloadL1000data(file, type = c("metadata", "geneInfo", "zscores"),
      zscoresId = NULL)

### Arguments

`file` | Character: filepath
`type` | Character: type of data to load
`zscoresId` | Character: identifiers to partially load z-scores file (for performance reasons)

### Value

Metadata as a data table

### Examples

    # Download L1000 metadata
    l1000metadata <- downloadL1000data("l1000metadata.txt", "metadata")

    # Download L1000 gene info
    downloadL1000data("l1000geneInfo.txt", "geneInfo")

    # Download L1000 zscores based on filtered metadata
    l1000metadataKnockdown <- filterL1000metadata(
      l1000metadata, cellLine="HepG2",
      perturbationType="Consensus signature from shRNAs targeting the same gene")

    if (interactive()) {
        downloadL1000data("l1000zscores.gctx.gz", "zscores",
                          l1000metadataKnockdown$sig_id)
    }

[Package cTRAP version 1.0.3 Index]