prepareENCODEgeneExpression {cTRAP} | R Documentation

## Load an ENCODE gene expression data

### Description

Load an ENCODE gene expression data

### Usage

    prepareENCODEgeneExpression(samples)

### Arguments

`samples` | List of loaded ENCODE samples

### Value

Data frame containing gene read counts

### Examples

    data("ENCODEsamples")
    ## Download ENCODE metadata for a specific cell line and gene
    # cellLine <- "HepG2"
    # gene <- "EIF4G1"
    # ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene)

    ## Download samples based on filtered ENCODE metadata
    # ENCODEsamples <- downloadENCODEsamples(ENCODEmetadata)

    prepareENCODEgeneExpression(ENCODEsamples)

[Package cTRAP version 1.0.3 Index]