correlatePerCellLine {cTRAP} | R Documentation

## Correlate differential expression scores per cell line

### Description

Correlate differential expression scores per cell line

### Usage

    correlatePerCellLine(cellLine, diffExprGenes, perturbations, method,
      pAdjustMethod = "BH")

### Arguments

`cellLine` | Character: cell line(s)
`diffExprGenes` | Numeric: named vector of differentially expressed genes where the name of the vector are gene names and the values are a statistic that represents significance and magnitude of differentially expressed genes (e.g. t-statistics)
`perturbations` | `l1000perturbations` object: file with L1000 loaded perturbations (check `loadL1000perturbations`)
`method` | Character: correlation method
`pAdjustMethod` | Character: method for p-value adjustment (for more details, see `p.adjust.methods`; only used if `method` is `spearman` or `pearson`)

### Value

Data frame with correlations statistics, p-value and q-value

[Package cTRAP version 1.0.3 Index]