cTRAP-package	cTRAP
checkColnames	checkColnames
closeOpenHandles	closeOpenHandles
compareAgainstL1000	compareAgainstL1000
correlatePerCellLine	correlatePerCellLine
counts	counts
cTRAP	cTRAP
diffExprStat	diffExprStat
downloadENCODEknockdownMetadata	downloadENCODEknockdownMetadata
downloadENCODEsamples	downloadENCODEsamples
downloadIfNeeded	downloadIfNeeded
downloadL1000data	downloadL1000data
ENCODEmetadata	ENCODEmetadata
ENCODEsamples	ENCODEsamples
filterL1000metadata	filterL1000metadata
fix.datatypes	fix.datatypes
GCT-class	GCT-class
getENCODEcontrols	getENCODEcontrols
getL1000conditions	getL1000Conditions
getL1000perturbationTypes	getL1000PerturbationTypes
l1000metadata	l1000metadata
l1000perturbationsKnockdown	l1000perturbationsKnockdown
l1000perturbationsSmallMolecules	l1000perturbationsSmallMolecules
loadENCODEsample	loadENCODEsample
loadL1000perturbations	loadL1000perturbations
performDifferentialExpression	performDifferentialExpression
performGSAperCellLine	performGSAperCellLine
plotGSEA	plotGSEA
plotL1000comparison	plotL1000comparison
prepareENCODEgeneExpression	prepareENCODEgeneExpression
processIds	processIds
readGctxIds	readGctxIds
readGctxMeta	readGctxMeta
subsetToIds	subsetToIds
