87da6b4e55a2610f7384c43e1ed9751b *CITATION
45473b3d868cf805062591b4c40443fb *DESCRIPTION
32eb12d7464d6aefd76cbac9d256fcfe *INDEX
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429724b30f0322e2d56778dd130867d3 *Meta/features.rds
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c71207cc0e82b3c57e47bc713afa950c *Meta/links.rds
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1cad03596e4e9ad44129005d70dafa4b *Meta/package.rds
1004cffc8dc06d6550099dd38bf42dd4 *Meta/vignette.rds
34d63c8de3a7d64927f016cb112be86f *NAMESPACE
44bf771963a999485ec375203ff141e8 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/chimera
1e4ee3e026b0a46cb8481dc86a2b86a4 *R/chimera.rdb
22925045d9827a78c4290294b5fac9cd *R/chimera.rdx
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ed66ceb68482d7e52fed5951c94484a6 *doc/chimera.Rnw
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9ccf27daf3794011ffe1635b8c8ba155 *doc/index.html
f1a31d70585ba05625885ff865f34fd5 *examples/Edgreen_fm.txt
b57ff34cd2f1aa0bfc9d14cbbf87442c *examples/Edgren_cs.txt
152c55b75090f883955f048f2d9fe35d *examples/Edgren_df.tsv
c159f47c7c39b4f0b1823fd150e223b2 *examples/Edgren_true.positives.txt
2faba782f61897fb1319300091d58d6e *examples/SULF2_ARFGEF2.fa
9ab4df2bc9cc084a9454bc7e4f073188 *examples/defuse_TP_FP.txt
302facd0bcc2ee5f4d7135646ad1721d *examples/edgren.stat.detection.txt
c67548992c68b3a43d14e31c0c921f52 *examples/fset_ARFGEF2-SULF2.rda
5cefa5be16527f831323b9f67bb11f13 *examples/mcf7.FMFusionReport
10bd6253adbee50ede9e25ef6ee874d0 *examples/mcf7_sample_1.fq
69b7f605646866d6881f21384e9e89da *examples/mcf7_sample_2.fq
a72fdea74c7ad1536707aeeaae4cf004 *examples/mcf7_trs_accepted_hits.bam
25b948c6dd395485bd9e5d62a432b0b1 *examples/uc002xtx.4-272_uc010zyd.2-988.fa
c15d087b75f5024b71b68d8e6dfae9fc *examples/uc002xtx.4-272_uc010zyd.2-988_R1.fastq
736dd356c6e5cc9fe12be768e8b9b95e *examples/uc002xtx.4-272_uc010zyd.2-988_R2.fastq
836a3e68c55bf760fa1849d15115f204 *examples/uc002xvp.1-243_uc002iyu.4-1031.fa
6764ab1e04832069f932c6d5570347ec *examples/uc002xvp.1-243_uc002iyu.4-1031_R1.fastq
8718b127a343845ce4bf4f51362aeb1f *examples/uc002xvp.1-243_uc002iyu.4-1031_R2.fastq
1f392fb664bca97839899b6ca935aed1 *help/AnIndex
81989d12ee3806b8884c3fbb8421ba2e *help/aliases.rds
454e843ff2ff19d0d28b65820fc9a921 *help/chimera.rdb
b679e35cdd7977f765d2167bab09e5a0 *help/chimera.rdx
9fd340867950117418b975821023c1f6 *help/paths.rds
ce360742bf3925d5a9f3355760c07ec6 *html/00Index.html
f669a8a393f6d177457d5f8af7bb2058 *html/MHmakeRandomString.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
56b16c6219c050b37ca3820b9f218907 *html/bam2fastq.html
65af683d73860bc1b583f618943b735e *html/breakpointOverlaps.html
cd92217c37ab49f05a6b886bbb29f595 *html/chimera-package.html
a24cef97e26d0e97f5d0f69995fd5d88 *html/chimeraSeqSet.html
f1b27b3b658a30552d91021e8cc853e6 *html/chimeraSeqs.html
8e1d917b51ae5e7e868727eec2070b55 *html/class.fSet.html
fd1aed9b6b0e8e39c19d6089dcb3ad4d *html/defuseTPTN.html
09339f67fa2b52e3676521debd5a36c2 *html/filterList.html
7fdebf307582913bc126a056d26e7125 *html/filterSamReads.html
be07b7a07160d917fd8e0b01b4b427fb *html/fusionName.html
5bc5545e7cbe67ab97f135ccd7838382 *html/fusionPeptides.html
786f7e07a6df08fcb0a40f19f25ce1ab *html/gapfillerInstallation.html
40610a8fa7f79d572585076ceb1e4f62 *html/gapfillerRun.html
4e05176fd42b7e3a0b3648f83252208a *html/gapfillerWrap.html
af392bd5b33560e375f33567d2e8a537 *html/importFusionData.html
0b41f3e07ed2511b47aacd3b48997dc7 *html/is.fSet.html
2fd1e0e3e1e8270160dce73e01e9e81e *html/newfSet.html
1e542de0024ad23152a9a7f251d5e8f4 *html/oncofuseInstallation.html
996b5575fc0771bd3f5dfd56222b1412 *html/oncofuseRun.html
5eb5a962f4e6810abb8cd24c620988d7 *html/picardInstallation.html
599e8f55c17e9ab694304d5b7f44de11 *html/plotCoverage.html
33173aed33557314a03b6178f352ec3d *html/prettyPrint.html
f7c4e957cc9a2d06c39017eb1cf844d6 *html/removingErrorLine.html
077633f0cb548455258f7c0075b574b2 *html/starInstallation.html
290e157d0f2ea5a888c1fa12989d62c0 *html/starReads.html
5b1e30bff35d27c8ad37300dd5774ab1 *html/starRun.html
a54e5db349f4ec485f2776f7451c0630 *html/subreadRun.html
028626679d9294b4838faeb5932b897c *html/supportingReads.html
32180eabd0dac0bc5b026e4f8707502a *html/tophatInstallation.html
ceb76e325bfc3e59111527e85ab85c08 *html/tophatRun.html
9cb6d0ba3d493bc217581c0b91dc496e *html/validateSamFile.html
3b023571960358560bf9cd61daef025b *libs/i386/chimera.dll
e69e1816f8857d858e7d15a3b10e3834 *libs/x64/chimera.dll
