chimeraviz-internals-fusions_to_link_data {chimeraviz} | R Documentation

## Create link data for RCircos from the given fusions.

### Description

This function takes a list of Fusion objects and creates a data frame in the format that RCircos::RCircos.Link.Plot() expects for link data.

### Usage

    .fusions_to_link_data(fusion_list, min_link_width = 1,
      max_link_widt = 10)

### Arguments

`fusion_list` | A list of Fusion objects.
`min_link_width` | The minimum link line width. Default = 1
`max_link_widt` | The maximum link line width. Default = 10

### Value

A data frame with fusion link data compatible with RCircos::RCircos.Link.Plot()

# @examples # Apparently examples shouldn't be set on private functions defuse833ke <- system.file("extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- import_defuse(defuse833ke, "hg19", 3) linkData <- chimeraviz::.fusions_to_link_data(fusions) # This linkData can be used with RCircos::RCircos.Link.Plot()

[Package chimeraviz version 1.8.5 Index]